Structure and hydrogen bonding in polyhydrated complexes of guanine

被引:26
|
作者
Sukhanov, Oleg S. [2 ]
Shishkin, Oleg V. [1 ,3 ]
Gorb, Leonid [3 ,4 ]
Leszczynski, Jerzy
机构
[1] Natl Acad Sci Ukraine, STC Inst Single Crystals, UA-61001 Kharkov, Ukraine
[2] Natl Acad Sci Ukraine, Inst Radiophys & Elect, Dept Biol Phys, UA-61085 Kharkov, Ukraine
[3] Jackson State Univ, Dept Chem, Computat Ctr Mol Struct & Interact, Jackson, MS 39217 USA
[4] Natl Acad Sci Ukraine, Inst Mol Biol & Genet, Dept Mol Biophys, UA-03143 Kiev, Ukraine
基金
美国国家科学基金会;
关键词
guanine; DFIF; polyhydrates; hydrogen bonding;
D O I
10.1007/s11224-007-9266-7
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
13, 16, and 17 water molecules were calculated using B3LYP/6-311G(d,p) level of theory. Interaction with water results in some deformation of geometrical parameters of guanine, which can be described as contribution of zwitter-ionic resonant form into the structure of DNA base. Saturation of water binding sites within guanine creates possibilities for the formation of the N center dot center dot center dot H-O hydrogen bond where the nitrogen atom of amino group acts as proton acceptor. The NBO analysis of guanine-water interactions reveals that hydrogen bonds involving the N(3) and N(7) atoms of guanine represent a case of mixed N center dot center dot center dot H-O/pi center dot center dot center dot H-O hydrogen bonds where contribution of pi-system into total energy of interaction varies from 3% to 41 %. This contribution significantly depends on orientation of the hydrogen atom of water molecule with respect to plane of purine bicycle and influence of neighboring water molecules.
引用
收藏
页码:171 / 180
页数:10
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