Taxonomic Classification for Living Organisms Using Convolutional Neural Networks

被引:9
|
作者
Khawaldeh, Saed [1 ,2 ,3 ,4 ,5 ,6 ]
Pervaiz, Usama [1 ,2 ,3 ]
Elsharnoby, Mohammed [4 ]
Alchalabi, Alaa Eddin [4 ]
Al-Zubi, Nayel [5 ]
机构
[1] Univ Burgundy, Erasmus Joint Master Program Med Imaging & Applic, F-21000 Dijon, France
[2] UNICLAM, Erasmus Joint Master Program Med Imaging & Applic, I-03043 Cassino Fr, Italy
[3] Univ Girona, Erasmus Joint Master Program Med Imaging & Applic, Girona 17004, Spain
[4] Istanbul Sehir Univ, Grad Sch Nat & Appl Sci, TR-34865 Kartal Istanbul, Turkey
[5] Al Balqa Appl Univ, Dept Comp Engn, Al Salt 19117, Jordan
[6] Aalto Univ, Dept Elect Engn & Automat, Espoo 02150, Finland
关键词
DNA; genes; taxonomic classification; convolutional neural networks; encoding; PROTEIN HOMOLOGY DETECTION; REMOTE HOMOLOGY; DNA; EVOLUTIONARY; MODES;
D O I
10.3390/genes8110326
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Taxonomic classification has a wide-range of applications such as finding out more about evolutionary history. Compared to the estimated number of organisms that nature harbors, humanity does not have a thorough comprehension of to which specific classes they belong. The classification of living organisms can be done in many machine learning techniques. However, in this study, this is performed using convolutional neural networks. Moreover, a DNA encoding technique is incorporated in the algorithm to increase performance and avoid misclassifications. The algorithm proposed outperformed the state of the art algorithms in terms of accuracy and sensitivity, which illustrates a high potential for using it in many other applications in genome analysis.
引用
收藏
页数:11
相关论文
共 50 条
  • [1] Taxonomic Classification of Objects with Convolutional Neural Networks
    Yang, SungRyeol
    Fox, Geoffrey C.
    Na, Bokyoon
    2020 IEEE INTERNATIONAL CONFERENCE ON BIG DATA (BIG DATA), 2020, : 5305 - 5314
  • [2] Convolutional Neural Networks for Biological Sequence Taxonomic Classification: A Comparative Study
    Helaly, Marwah A.
    Rady, Sherine
    Aref, Mostafa M.
    PROCEEDINGS OF THE INTERNATIONAL CONFERENCE ON ADVANCED INTELLIGENT SYSTEMS AND INFORMATICS 2019, 2020, 1058 : 523 - 533
  • [3] Plant Classification using Convolutional Neural Networks
    Yalcin, Hulya
    Razavi, Salar
    2016 FIFTH INTERNATIONAL CONFERENCE ON AGRO-GEOINFORMATICS (AGRO-GEOINFORMATICS), 2016, : 233 - 237
  • [4] Sound Classification Using Convolutional Neural Networks
    Jaiswal, Kaustumbh
    Patel, Dhairya Kalpeshbhai
    2018 SEVENTH IEEE INTERNATIONAL CONFERENCE ON CLOUD COMPUTING IN EMERGING MARKETS (CCEM), 2018, : 81 - 84
  • [5] Strabismus Classification using Convolutional Neural Networks
    Kim, Donghwan
    Joo, Jaehan
    Zhu, Guohua
    Seo, Jeongbin
    Ha, Jaeseung
    Kim, Suk Chan
    3RD INTERNATIONAL CONFERENCE ON ARTIFICIAL INTELLIGENCE IN INFORMATION AND COMMUNICATION (IEEE ICAIIC 2021), 2021, : 216 - 218
  • [6] Query Classification Using Convolutional Neural Networks
    Zhang, Hanxiao
    Song, Wei
    Liu, Lizhen
    Du, Chao
    Zhao, Xinlei
    2017 10TH INTERNATIONAL SYMPOSIUM ON COMPUTATIONAL INTELLIGENCE AND DESIGN (ISCID), VOL 2, 2017, : 441 - 444
  • [7] Clothing Classification Using Convolutional Neural Networks
    Hodecker, Andrei
    Fernandes, Anita M. R.
    Steffens, Alisson
    Crocker, Paul
    Leithardt, Valderi R. Q.
    2020 15TH IBERIAN CONFERENCE ON INFORMATION SYSTEMS AND TECHNOLOGIES (CISTI'2020), 2020,
  • [8] Classification of Fruits using Convolutional Neural Networks
    Raut, Roshani
    Jadhav, Anuja
    Sorte, Chaitrali
    Chaudhari, Anagha
    2022 SECOND INTERNATIONAL CONFERENCE ON ADVANCES IN ELECTRICAL, COMPUTING, COMMUNICATION AND SUSTAINABLE TECHNOLOGIES (ICAECT), 2022,
  • [9] Texture classification using convolutional neural networks
    Tivive, Fok Hing Chi
    Bouzerdoum, Abdesselam
    TENCON 2006 - 2006 IEEE REGION 10 CONFERENCE, VOLS 1-4, 2006, : 660 - +
  • [10] Emphysema Classification Using Convolutional Neural Networks
    Pei, Xiaomin
    INTELLIGENT ROBOTICS AND APPLICATIONS, ICIRA 2015, PT I, 2015, 9244 : 455 - 461