Finite Element Approximation to a Finite-Size Modified Poisson-Boltzmann Equation

被引:13
|
作者
Chaudhry, Jehanzeb Hameed [1 ]
Bond, Stephen D. [2 ]
Olson, Luke N. [1 ]
机构
[1] Univ Illinois, Dept Comp Sci, Urbana, IL 61801 USA
[2] Sandia Natl Labs, Appl Math & Applicat Grp, Albuquerque, NM 87185 USA
基金
美国国家科学基金会;
关键词
Finite elements; Poisson-Boltzmann; Poisson-Bikerman; ELECTRICAL DOUBLE-LAYER; ELECTROSTATICS; IONS; MINIMIZATION; SOLVENT; SYSTEMS; ENERGY; SHAPE;
D O I
10.1007/s10915-010-9441-7
中图分类号
O29 [应用数学];
学科分类号
070104 ;
摘要
The inclusion of steric effects is important when determining the electrostatic potential near a solute surface. We consider a modified form of the Poisson-Boltzmann equation, often called the Poisson-Bikerman equation, in order to model these effects. The modifications lead to bounded ionic concentration profiles and are consistent with the Poisson-Boltzmann equation in the limit of zero-size ions. Moreover, the modified equation fits well into existing finite element frameworks for the Poisson-Boltzmann equation. In this paper, we advocate a wider use of the modified equation and establish well-posedness of the weak problem along with convergence of an associated finite element formulation. We also examine several practical considerations such as conditioning of the linearized form of the nonlinear modified Poisson-Boltzmann equation, implications in numerical evaluation of the modified form, and utility of the modified equation in the context of the classical Poisson-Boltzmann equation.
引用
收藏
页码:347 / 364
页数:18
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