Group testing regression models with dilution submodels

被引:5
|
作者
Warasi, Md S. [1 ]
McMahan, Christopher S. [2 ]
Tebbs, Joshua M. [3 ]
Bilder, Christopher R. [4 ]
机构
[1] Radford Univ, Dept Math & Stat, Radford, VA 24142 USA
[2] Clemson Univ, Dept Math Sci, Clemson, SC 29634 USA
[3] Univ South Carolina, Dept Stat, 209G LeConte, Columbia, SC 29208 USA
[4] Univ Nebraska Lincoln, Dept Stat, Lincoln, NE 68583 USA
基金
美国国家卫生研究院;
关键词
binary regression; dilution effect; likelihood ratio test; maximum likelihood; pooled testing; sensitivity; PREVALENCE ESTIMATION; CASE IDENTIFICATION; LIKELIHOOD RATIO; SAMPLES; HIV; INFECTIONS; POOLS; MISCLASSIFICATION; PROPORTIONS; POPULATIONS;
D O I
10.1002/sim.7455
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Group testing, where specimens are tested initially in pools, is widely used to screen individuals for sexually transmitted diseases. However, a common problem encountered in practice is that group testing can increase the number of false negative test results. This occurs primarily when positive individual specimens within a pool are diluted by negative ones, resulting in positive pools testing negatively. If the goal is to estimate a population-level regression model relating individual disease status to observed covariates, severe bias can result if an adjustment for dilution is not made. Recognizing this as a critical issue, recent binary regression approaches in group testing have utilized continuous biomarker information to acknowledge the effect of dilution. In this paper, we have the same overall goal but take a different approach. We augment existing group testing regression models (that assume no dilution) with a parametric dilution submodel for pool-level sensitivity and estimate all parameters using maximum likelihood. An advantage of our approach is that it does not rely on external biomarker test data, which may not be available in surveillance studies. Furthermore, unlike previous approaches, our framework allows one to formally test whether dilution is present based on the observed group testing data. We use simulation to illustrate the performance of our estimation and inference methods, and we apply these methods to 2 infectious disease data sets.
引用
收藏
页码:4860 / 4872
页数:13
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