Qaroun Lake, the study area, is a natural protectorate located at the northern part of El Fayoum Depression, Egypt. An integrated approach including hydrochemistry, mineralogy of sediments and GIS analysis and modeling was conducted in order to determine the different geoenvironmental parameters affecting the lake environmental system. Forty two environmental water and sediment samples were collected from the lake and relevant drains in 2013. The water samples were analyzed for major ions and trace elements and the sediment ones were analyzed for clay and non-clay minerals. This study showed that the saline water of the lake (31490 < TDS < 45100 mg/l) typically is Na-Cl-SO4 water possessing primary salinity properties dominated by alkalies and strong acids. The order of ionic dominance was Na+ > Mg2+ > Ca2+ > K+ Cl- > HCO3- > CO32- The water salt assemblages were KCl - NaCl - Na2SO4 - MgSO4 - CaSO4 - Ca(HCO3)(2) reflecting a mixed water type. The contents of NaCl, Na2SO4 and MgSO4 salts were found to be fully controlled with the lake depths. The hydrogeochemical investigations revealed that the evaporation concentration is the primary process of the lake water evolution. The presence of trace elements in the lake water is essentially of allochtonous origin. The GIS-based maps indicated that the concentrations of Zn, Co, Mo, Pb, F and Cd elements in water had increased in the eastern part of the lake; meanwhile, the contents of NO3- ions had increased in the southwestern part indicating that these parts were the most vulnerable to the potential pollution with such elements. The XRD analysis revealed the existence of different mineral assemblages (quartz, kaolinite, goethite, calcite, halite, hematite, feldspar, gypsum, dolomite and saponite) in bottom sediments. The mineral concentrations varied greatly from place to another place along the lake and their distributions were asymmetric. The dominant minerals were the quartz and calcite. The mineralogical compositions of sediments were highly affected by the natural and man-mad activities. The most effective processes were the type of the water and solid materials coming from the northern geologic formations (by the northern winds) and from the eastern and southern drains. The land coverage change detection maps indicated the positive and negative changes in the lake area and its surroundings during the period of 1987-2000. The positive change in the area of the lake was about 12.63 km(2) along the northern part of the lake, while the negative one was about 4.56 km(2) in the southern parts. Based on the obtained results, some recommendations were presented to avoid the detrimental effects originated from the natural and human activities. (C) 2017 Elsevier Ltd. All rights reserved.