VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R

被引:1804
|
作者
Chen, Hanbo [1 ]
Boutros, Paul C. [1 ]
机构
[1] MaRS Ctr, Ontario Inst Canc Res, Toronto, ON M5G 0A3, Canada
来源
BMC BIOINFORMATICS | 2011年 / 12卷
基金
加拿大健康研究院;
关键词
Venn Diagram; Tiff File; Euler Diagram; Simple Geometrical Shape; Graphical Accuracy;
D O I
10.1186/1471-2105-12-35
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Background: Visualization of orthogonal (disjoint) or overlapping datasets is a common task in bioinformatics. Few tools exist to automate the generation of extensively-customizable, high-resolution Venn and Euler diagrams in the R statistical environment. To fill this gap we introduce VennDiagram, an R package that enables the automated generation of highly-customizable, high-resolution Venn diagrams with up to four sets and Euler diagrams with up to three sets. Results: The VennDiagram package offers the user the ability to customize essentially all aspects of the generated diagrams, including font sizes, label styles and locations, and the overall rotation of the diagram. We have implemented scaled Venn and Euler diagrams, which increase graphical accuracy and visual appeal. Diagrams are generated as high-definition TIFF files, simplifying the process of creating publication-quality figures and easing integration with established analysis pipelines. Conclusions: The VennDiagram package allows the creation of high quality Venn and Euler diagrams in the R statistical environment.
引用
收藏
页数:7
相关论文
共 4 条
  • [1] VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R
    Hanbo Chen
    Paul C Boutros
    [J]. BMC Bioinformatics, 12
  • [2] VennDiagramWeb: a web application for the generation of highly customizable Venn and Euler diagrams
    Lam, Felix
    Lalansingh, Christopher M.
    Babaran, Holly E.
    Wang, Zhiyuan
    Prokopec, Stephenie D.
    Fox, Natalie S.
    Boutros, Paul C.
    [J]. BMC BIOINFORMATICS, 2016, 17
  • [3] VennDiagramWeb: a web application for the generation of highly customizable Venn and Euler diagrams
    Felix Lam
    Christopher M. Lalansingh
    Holly E. Babaran
    Zhiyuan Wang
    Stephenie D. Prokopec
    Natalie S. Fox
    Paul C. Boutros
    [J]. BMC Bioinformatics, 17
  • [4] ggVennDiagram: An Intuitive, Easy-to-Use, and Highly Customizable R Package to Generate Venn Diagram
    Gao, Chun-Hui
    Yu, Guangchuang
    Cai, Peng
    [J]. FRONTIERS IN GENETICS, 2021, 12