The reduction of mass and trihalomethane formation potential ( THMFP) of dissolved organic matter ( DOM) and its fractions from secondary effluent during laboratory-scale soil-aquifer treatment ( SAT) soil columns were studied. Reduction in dissolved organic carbon ( DOC), absorbance of ultraviolet light at 254 nm ( UV-254), biodegradable dissolved organic carbon ( BDOC) and nonbiodegradable dissolved organic carbon ( NBDOC) for the bulk DOM averaged 72.35%, 53.98%, 97.49% and 35.33% across the soil columns, respectively. Using XAD-8 and XAD-4 resins, DOM was fractionated into 3 fractions: hydrophobic acid ( HPO-A), transphilic acid ( TPI-A) and hydrophilic fraction ( HPI). HPO-A was removed by 61.06%, TPI-A by 54.86% and HPI by 74.95% as DOC as a consequence of the laboratory-scale SAT, respectively. The reduction of THMFP from HPO-A, TPI-A and HPI was 27.24%, 26.24% and 36.08%, respectively. Proton nuclear magnetic resonance ( H-1-NMR) spectra revealed that the HPO-A isolated from the secondary effluent contained more aromatic functional groups than the corresponding TPI-A. Fourier-transform infrared ( FT-IR) spectrum analysis illustrated that TPI-A had decreased hydrocarbon and increased aromatics content in the SAT columns. Specific ultraviolet light absorbance ( SUVA) and specific THMFP for each DOM fraction increased across the soil columns and HPI exhibited greater increase in both than HPO-A and TPI-A. The most problematic THM precursor was found to be HPO-A with its high quantity present in recharged water and high chlorine reactivity.