Reference standards for next-generation sequencing

被引:161
|
作者
Hardwick, Simon A. [1 ,2 ]
Deveson, Ira W. [1 ,3 ]
Mercer, Tim R. [1 ,2 ,4 ]
机构
[1] Garvan Inst Med Res, Genom & Epigenet Div, Sydney, NSW 2010, Australia
[2] Univ New South Wales, Fac Med, St Vincents Clin Sch, Sydney, NSW 2052, Australia
[3] Univ New South Wales, Sch Biotechnol & Biomol Sci, Fac Sci, Sydney, NSW 2052, Australia
[4] Altius Inst Biomed Sci, Seattle, WA 98121 USA
基金
英国医学研究理事会;
关键词
GENOMIC REFERENCE MATERIALS; REFERENCE MATERIAL PANEL; DNA REFERENCE MATERIALS; RNA-SEQ; QUALITY-CONTROL; SYSTEMATIC EVALUATION; LABORATORY STANDARDS; WHOLE-EXOME; VALIDATION; ASSOCIATION;
D O I
10.1038/nrg.2017.44
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Next-generation sequencing (NGS) provides a broad investigation of the genome, and it is being readily applied for the diagnosis of disease-associated genetic features. However, the interpretation of NGS data remains challenging owing to the size and complexity of the genome and the technical errors that are introduced during sample preparation, sequencing and analysis. These errors can be understood and mitigated through the use of reference standards - well-characterized genetic materials or synthetic spike-in controls that help to calibrate NGS measurements and to evaluate diagnostic performance. The informed use of reference standards, and associated statistical principles, ensures rigorous analysis of NGS data and is essential for its future clinical use.
引用
收藏
页码:473 / 484
页数:12
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