An analysis of the Burrows-Wheeler Transform

被引:208
|
作者
Manzini, G [1 ]
机构
[1] Univ Piemonte Orientale, Dipartimento Sci & Tecnol Avanzate, I-15100 Alessandria, Italy
关键词
algorithms; performance; block sorting; Burrows-Wheeler Transform; move-to-front encoding; worst-case analysis of compression;
D O I
10.1145/382780.382782
中图分类号
TP3 [计算技术、计算机技术];
学科分类号
0812 ;
摘要
The Burrows-Wheeler Transform (also known as Block-Sorting) is at the base of compression algorithms that are the state of the art in lossless data compression. In this paper, we analyze two algorithms that use this technique. The first one is the original algorithm described by Burrows and Wheeler, which, despite its simplicity. outperforms the Gzip compressor. The second one uses an additional run-length encoding step to improve compression. We prove that the compression ratio of both algorithms can be bounded in terms of the kth order empirical entropy of the input string for any k greater than or equal to 0. We make no assumptions on the input and we obtain bounds which hold in the worst case, that is, for every possible input string. All previous results for Block-Sorting algorithms were concerned with the average compression ratio and have been established assuming that the input comes from a finite-order Markov source.
引用
下载
收藏
页码:407 / 430
页数:24
相关论文
共 50 条
  • [1] An analysis of the Burrows-Wheeler Transform
    Manzini, G
    PROCEEDINGS OF THE TENTH ANNUAL ACM-SIAM SYMPOSIUM ON DISCRETE ALGORITHMS, 1999, : 669 - 677
  • [2] Burrows-Wheeler transform for terabases
    Siren, Jouni
    2016 DATA COMPRESSION CONFERENCE (DCC), 2016, : 211 - 220
  • [3] Dynamic Burrows-Wheeler Transform
    Salson, Mikael
    Lecroq, Thierry
    Leonard, Martine
    Mouchard, Laurent
    PROCEEDINGS OF THE PRAGUE STRINGOLOGY CONFERENCE 2008, 2008, : 13 - 25
  • [4] Inverting the Burrows-Wheeler Transform
    Bird, RS
    Mu, SC
    JOURNAL OF FUNCTIONAL PROGRAMMING, 2004, 14 : 603 - 612
  • [5] An extension of the Burrows-Wheeler transform
    Mantaci, S.
    Restivo, A.
    Rosone, G.
    Sciortino, M.
    THEORETICAL COMPUTER SCIENCE, 2007, 387 (03) : 298 - 312
  • [6] Attacking Scrambled Burrows-Wheeler Transform
    Stanek, Martin
    INFOCOMMUNICATIONS JOURNAL, 2012, 4 (04): : 24 - 27
  • [7] Bit Catastrophes for the Burrows-Wheeler Transform
    Giuliani, Sara
    Inenaga, Shunsuke
    Liptak, Zsuzsanna
    Romana, Giuseppe
    Sciortino, Marinella
    Urbina, Cristian
    DEVELOPMENTS IN LANGUAGE THEORY, DLT 2023, 2023, 13911 : 86 - 99
  • [8] The Burrows-Wheeler similarity distribution between biological sequences based on Burrows-Wheeler transform
    Yang, Lianping
    Zhang, Xiangde
    Wang, Tianming
    JOURNAL OF THEORETICAL BIOLOGY, 2010, 262 (04) : 742 - 749
  • [9] Metagenomic analysis through the extended Burrows-Wheeler transform
    Veronica Guerrini
    Felipe A. Louza
    Giovanna Rosone
    BMC Bioinformatics, 21
  • [10] Burrows-Wheeler transform and Sturmian words
    Mantaci, S
    Restivo, A
    Sciortino, M
    INFORMATION PROCESSING LETTERS, 2003, 86 (05) : 241 - 246