Whole-mitochondrial genome sequencing in primary open-angle glaucoma using massively parallel sequencing identifies novel and known pathogenic variants

被引:41
|
作者
Sundaresan, Periasamy [1 ]
Simpson, David A. [2 ]
Sambare, Chitra [2 ,3 ]
Duffy, Seamus [4 ]
Lechner, Judith [2 ]
Dastane, Aditi [5 ]
Dervan, Edward W. [6 ]
Vallabh, Neeru [7 ]
Chelerkar, Vidya [3 ]
Deshpande, Madan [3 ]
O'Brien, Colm [6 ]
McKnight, Amy Jayne [4 ]
Willoughby, Colin E. [7 ]
机构
[1] Aravind Med Res Fdn, Dr G Venkataswamy Eye Res Inst, Dept Genet, Madurai, Tamil Nadu, India
[2] Queens Univ Belfast, Ctr Med Expt, Belfast, Antrim, North Ireland
[3] PBMAs H Desai Eye Hosp, Poona Blind Mens Assoc, Pune, Maharashtra, India
[4] Queens Univ Belfast, Ctr Publ Hlth, Belfast, Antrim, North Ireland
[5] Deenanth Mangeshkar Hosp, Dept Genet, Pune, Maharashtra, India
[6] Mater Misericordiae Univ Hosp, Inst Ophthalmol, Dublin, Ireland
[7] Univ Liverpool, Inst Ageing & Chron Dis, Dept Eye & Vis Sci, Liverpool L69 3BX, Merseyside, England
关键词
massively parallel sequencing; mitochondria; mtDNA; next-generation sequencing; primary open-angle glaucoma; PRIMARY CONGENITAL GLAUCOMA; OXIDATIVE STRESS; DNA REPAIR; DYSFUNCTION; NUCLEAR; DISORDERS; HETEROPLASMY; DIAGNOSIS; DEFECTS; DISEASE;
D O I
10.1038/gim.2014.121
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Purpose: The aim of this study was to determine whether mutations in mitochondrial DNA play a role in high-pressure primary open-angle glaucoma (OMIM 137760) by analyzing new data from massively parallel sequencing of mitochondrial DNA. Methods: Glaucoma patients with high-tension primary open-angle glaucoma and ethnically matched and age-matched control subjects without glaucoma were recruited. The entire human mitochondrial genome was amplified in two overlapping fragments by long-range. polymerase chain reaction and used as a template for massively parallel sequencing on an Ion Torrent Personal Genome Machine. All variants were confirmed by conventional Sanger sequencing. Results: Whole-mitochondrial genome sequencing was performed in 32 patients with primary open-angle glaucoma from India (n = 16) and Ireland (n = 16). In 16 of the 32 patients with primary open-angle glaucoma (50% of cases), there were 22 mitochondrial DNA mutations consisting of 7 novel mutations and 8 previously reported disease-associated sequence variants. Eight of 22 (36.4%) of the mitochondrial DNA mutations were in complex I mitochondrial genes. Conclusion: Massively parallel sequencing using the Ion Torrent Personal Genome Machine with confirmation by Sanger sequencing detected a pathogenic mitochondrial DNA mutation in 50% of the primary open-angle glaucoma cohort. Our findings support the emerging concept that mitochondrial dysfunction results in the development of glaucoma and, more specifically, that complex I defects play a significant role in primary open-angle glaucoma pathogenesis.
引用
收藏
页码:279 / 284
页数:6
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