Unveiled electric profiles within hydrogen bonds suggest DNA base pairs with similar bond strengths

被引:5
|
作者
Ruiz-Blanco, Y. B. [1 ]
Almeida, Y. [2 ,6 ,7 ]
Sotomayor-Torres, C. M. [3 ,4 ,5 ]
Garcia, Y. [8 ]
机构
[1] Univ Cent Marta Abreu Las Villas, Fac Quim & Farm, Santa Clara, Villa Clara, Cuba
[2] Ctr Mol Immunol, Syst Biol Direct, Havana, Cuba
[3] CSIC, ICN2, Campus UAB, Barcelona, Spain
[4] BIST, Campus UAB, Barcelona, Spain
[5] ICREA, Barcelona, Spain
[6] Hamburg Ctr Ultrafast Imaging, Hamburg, Germany
[7] Univ Hamburg, Dept Chem, Inst Biochem & Mol Biol, Hamburg, Germany
[8] Univ Politecn Cataluna, Dept Math, ESAB, Esteve Terradas, Castelldefels, Spain
来源
PLOS ONE | 2017年 / 12卷 / 10期
关键词
SINGLE-MOLECULE; STACKING; STABILITY; DYNAMICS;
D O I
10.1371/journal.pone.0185638
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Electrical forces are the background of all the interactions occurring in biochemical systems. From here and by using a combination of ab-initio and ad-hoc models, we introduce the first description of electric field profiles with intrabond resolution to support a characterization of single bond forces attending to its electrical origin. This fundamental issue has eluded a physical description so far. Our method is applied to describe hydrogen bonds (HB) in DNA base pairs. Numerical results reveal that base pairs in DNA could be equivalent considering HB strength contributions, which challenges previous interpretations of thermodynamic properties of DNA based on the assumption that Adenine/Thymine pairs are weaker than Guanine/Cytosine pairs due to the sole difference in the number of HB. Thus, our methodology provides solid foundations to support the development of extended models intended to go deeper into the molecular mechanisms of DNA functioning.
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页数:11
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