MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation

被引：24
|
作者：
Liao, Yu-Chieh [1 ]
Lin, Hsin-Hung [1 ]
Sabharwal, Amarpreet [2 ]
Haase, Elaine M. [2 ]
Scannapieco, Frank A. [2 ]
机构：
[1] Natl Hlth Res Inst, Inst Populat Hlth Sci, Div Biostat & Bioinformat, Zhunan, Miaoli County, Taiwan
[2] SUNY Buffalo, Dept Oral Biol, Buffalo, NY 14260 USA
来源：
JOURNAL OF MICROBIOLOGICAL METHODS | 2015年 / 113卷
关键词：
Bioinformatics; Prokaryote; Whole genome sequencing; Assembly; Annotation; TOOL;
D O I：
10.1016/j.mimet.2015.04.006
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
MyPro is a software pipeline for high-quality prokaryotic genome assembly and annotation. It was validated on 18 oral streptococcal strains to produce submission-ready, annotated draft genomes. MyPro installed as a virtual machine and supported by updated databases will enable biologists to perform quality prokaryotic genome assembly and annotation with ease. (C) 2015 The Authors. Published by Elsevier B.V.
引用
收藏
页码：72 / 74
页数：3
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