RiboSketch: versatile visualization of multi-stranded RNA and DNA secondary structure

被引：15

作者：

Lu, Jacob S. ^{[1
]}

Bindewald, Eckart ^{[2
]}

Kasprzak, Wojciech K. ^{[2
]}

Shapiro, Bruce A. ^{[1
]}

机构：

[1] NCI, RNA Biol Lab, Frederick, MD 21702 USA

[2] NCI, Basic Sci Program, RNA Biol Lab, Frederick Natl Lab Canc Res, Frederick, MD 21702 USA

来源：

BIOINFORMATICS | 2018年 / 34卷 / 24期

基金：

美国国家卫生研究院;

关键词：

D O I：

10.1093/bioinformatics/bty468

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Creating clear, visually pleasing 2D depictions of RNA and DNA strands and their interactions is important to facilitate and communicate insights related to nucleic acid structure. Here we present RiboSketch, a secondary structure image production application that enables the visualization of multistranded structures via layout algorithms, comprehensive editing capabilities, and a multitude of simulation modes. These interactive features allow RiboSketch to create publication quality diagrams for structures with a wide range of composition, size and complexity. The program may be run in any web browser without the need for installation, or as a standalone Java application.

引用

页码：4297 / 4299

页数：3

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