Genome-Wide Identification and Expression Analysis of SnRK2 Gene Family in Dormant Vegetative Buds of Liriodendron chinense in Response to Abscisic Acid, Chilling, and Photoperiod

被引:5
|
作者
Hussain, Quaid [1 ,2 ]
Zheng, Manjia [1 ,2 ]
Chang, Wenwen [1 ,2 ]
Ashraf, Muhammad Furqan [3 ]
Khan, Rayyan [4 ]
Asim, Muhammad [1 ,4 ]
Riaz, Muhammad Waheed [1 ,5 ]
Alwahibi, Mona S. [6 ]
Elshikh, Mohamed S. [6 ]
Zhang, Rui [1 ,2 ]
Wu, Jiasheng [1 ,2 ]
机构
[1] Zhejiang A&F Univ, State Key Lab Subtrop Silviculture, 666 Wusu St, Hangzhou 311300, Peoples R China
[2] Key Lab Modern Silvicultural Technol Zhejiang Pro, Hangzhou 311300, Peoples R China
[3] UiT Arctic Univ Norway, Dept Arctic & Marine Biol, N-9009 Tromso, Norway
[4] Chinese Acad Agr Sci, Tobacco Res Inst, Key Lab Tobacco Biol & Proc, Minist Agr & Rural Affairs, Qingdao 266101, Peoples R China
[5] Zhejiang A&F Univ, Zhejiang Prov Key Lab Resources Protect & Innovat, Hangzhou 311300, Peoples R China
[6] King Saud Univ, Dept Bot & Microbiol, Coll Sci, Riyadh 11451, Saudi Arabia
关键词
abscisic acid; chilling; photoperiod; qRT-PCR; SnRK2 kinase family; 2C PROTEIN PHOSPHATASES; OSMOTIC-STRESS; ARABIDOPSIS; REGULATORS; INDUCTION; KINASES; RELEASE; WHEAT; ACTIVATION; CLONING;
D O I
10.3390/genes13081305
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Protein kinases play an essential role in plants' responses to environmental stress signals. SnRK2 (sucrose non-fermenting 1-related protein kinase 2) is a plant-specific protein kinase that plays a crucial role in abscisic acid and abiotic stress responses in some model plant species. In apple, corn, rice, pepper, grapevine, Arabidopsis thaliana, potato, and tomato, a genome-wide study of the SnRK2 protein family was performed earlier. The genome-wide comprehensive investigation was first revealed to categorize the SnRK2 genes in the Liriodendron chinense (L. chinense). The five SnRK2 genes found in the L. chinense genome were highlighted in this study. The structural gene variants, 3D structure, chromosomal distributions, motif analysis, phylogeny, subcellular localization, cis-regulatory elements, expression profiles in dormant buds, and photoperiod and chilling responses were all investigated in this research. The five SnRK2 genes from L. chinense were grouped into groups (I-IV) based on phylogeny analysis, with three being closely related to other species. Five hormones-, six stress-, two growths and biological process-, and two metabolic-related responsive elements were discovered by studying the cis-elements in the promoters. According to the expression analyses, all five genes were up- and down-regulated in response to abscisic acid (ABA), photoperiod, chilling, and chilling, as well as photoperiod treatments. Our findings gave insight into the SnRK2 family genes in L. chinense and opened up new study options.
引用
收藏
页数:17
相关论文
共 50 条
  • [1] Genome-wide identification, characterization and expression analysis of the ABA receptor PYL gene family in response to ABA, photoperiod, and chilling in vegetative buds of Liriodendron chinense
    Hussain, Quaid
    Zheng, Manjia
    Ashraf, Muhammad Furqan
    Khan, Rayyan
    Yasir, Muhammad
    Farooq, Saqib
    Zhang, Rui
    Wu, Jiasheng
    [J]. SCIENTIA HORTICULTURAE, 2022, 303
  • [2] Genome-Wide Identification and Expression Analysis of CCO Gene Family in Liriodendron chinense
    Xue, Guoxia
    Hu, Lingfeng
    Zhu, Liming
    Chen, Ya
    Qiu, Chen
    Fan, Ruifang
    Ma, Xiaoxiao
    Cao, Zijian
    Chen, Jinhui
    Shi, Jisen
    Hao, Zhaodong
    [J]. PLANTS-BASEL, 2023, 12 (10):
  • [3] Genome-Wide Identification and Expression Analysis of TPS Gene Family in Liriodendron chinense
    Cao, Zijian
    Ma, Qianxi
    Weng, Yuhao
    Shi, Jisen
    Chen, Jinhui
    Hao, Zhaodong
    [J]. GENES, 2023, 14 (03)
  • [4] Genome-Wide Identification and Expression Profile Analysis of the SnRK2 Gene Family in Nicotiana tabacum
    Jinghao Li
    Jiangyu Song
    Changjun Li
    Juntao Ma
    Jiawang Liu
    Xiaowei Zhu
    Jingchao Li
    Fan He
    Chao Yang
    [J]. Biochemical Genetics, 2022, 60 : 1511 - 1526
  • [5] Genome-wide identification, annotation and expression profile analysis of SnRK2 gene family in grapevine
    Liu, J. -Y.
    Chen, N. -N.
    Cheng, Z. -M.
    Xiong, J. -S.
    [J]. AUSTRALIAN JOURNAL OF GRAPE AND WINE RESEARCH, 2016, 22 (03) : 478 - 488
  • [6] Genome-Wide Identification and Expression Profile Analysis of the SnRK2 Gene Family in Nicotiana tabacum
    Li, Jinghao
    Song, Jiangyu
    Li, Changjun
    Ma, Juntao
    Liu, Jiawang
    Zhu, Xiaowei
    Li, Jingchao
    He, Fan
    Yang, Chao
    [J]. BIOCHEMICAL GENETICS, 2022, 60 (05) : 1511 - 1526
  • [7] Genome-wide identification and expression profiling of the SnRK2 gene family in Malus prunifolia
    Shao, Yun
    Qin, Yuan
    Zou, Yangjun
    Ma, Fengwang
    [J]. GENE, 2014, 552 (01) : 87 - 97
  • [8] Genome-wide identification and expression analysis of SnRK2 gene family in mungbean (Vigna radiata) in response to drought stress
    Fatima, Annaira
    Khan, Muhammad Jadoon
    Awan, Hassaan Mehboob
    Akhtar, Malik Nadeem
    Bibi, Nazia
    Sughra, Kalsoom
    Khan, Muhammad Ramzan
    Ahmad, Raza
    Ibrahim, Muhammad
    Hussain, Jamshaid
    Sadiq, Irfan
    [J]. CROP & PASTURE SCIENCE, 2020, 71 (05): : 469 - 476
  • [9] Genome-wide identification, characterization, and expression analysis of SnRK2 family in Hevea brasiliensis
    Dong Guo
    Hui-Liang Li
    Jia-Hong Zhu
    Ying Wang
    Feng An
    Gui-Shui Xie
    Shi-Qing Peng
    [J]. Tree Genetics & Genomes, 2017, 13
  • [10] Genome-wide identification, characterization, and expression analysis of SnRK2 family in Hevea brasiliensis
    Guo, Dong
    Li, Hui-Liang
    Zhu, Jia-Hong
    Wang, Ying
    An, Feng
    Xie, Gui-Shui
    Peng, Shi-Qing
    [J]. TREE GENETICS & GENOMES, 2017, 13 (04)