Hybrid Particle-Field Coarse-Grained Models for Biological Phospholipids

被引:58
|
作者
De Nicola, Antonio [1 ,2 ]
Zhao, Ying [1 ]
Kawakatsu, Toshihiro [3 ]
Roccatano, Danilo [4 ]
Milano, Giuseppe [1 ,2 ]
机构
[1] Univ Salerno, Dipartimento Chim & Biol, I-84084 Salerno, SA, Italy
[2] IMAST Scarl Technol Dist Polymer & Composite Engn, I-80055 Portici, NA, Italy
[3] Tohoku Univ, Dept Phys, Aoba Ku, Sendai, Miyagi 9808578, Japan
[4] Jacobs Univ Bremen, D-28759 Bremen, Germany
关键词
INTERACTING POLYMERIC ASSEMBLIES; MOLECULAR-DYNAMICS SIMULATION; X-RAY-SCATTERING; COMPUTER-SIMULATIONS; FORCE-FIELD; MEMBRANES; TRANSITION; NEUTRON; BACK; VIEW;
D O I
10.1021/ct200132n
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
In the framework of a recently developed scheme for a hybrid particle-field simulation technique where self-consistent field theory (SCF) and molecular dynamics (MD) are combined [J. Chem. Phys. 2009, 130, 214106], specific coarse-grained models for phospholipids and water have been developed. We optimized the model parameters, which are necessary in evaluating the interactions between the particles and the density fields, so that the coarse-grained model can reproduce the structural properties of the reference particle particle simulations. The development of these specific coarse-grained models suitable for hybrid particle-field simulations opens the way toward simulations of large-scale systems employing models with chemical specificity, especially for biological systems.
引用
收藏
页码:2947 / 2962
页数:16
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