Picky: a simple online PRM and SRM method designer for targeted proteomics

被引：23
|
作者：
Zauber, Henrik [1 ]
Kirchner, Marieluise [2 ]
Selbach, Matthias [1 ]
机构：
[1] Max Delbruck Ctr Mol Med, Proteome Dynam, Berlin, Germany
[2] Berlin Inst Hlth, BIH Core Facil Prote, Berlin, Germany
来源：
NATURE METHODS | 2018年 / 15卷 / 03期
关键词：
D O I：
10.1038/nmeth.4607
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
引用
收藏
页码：156 / 157
页数：5
相关论文
共 50 条
  • [1] Picky: a simple online PRM and SRM method designer for targeted proteomics
    Henrik Zauber
    Marieluise Kirchner
    Matthias Selbach
    Nature Methods, 2018, 15 : 156 - 157
  • [2] Targeted proteomics coming of age - SRM, PRM and DIA performance evaluated from a core facility perspective
    Kockmann, Tobias
    Trachsel, Christian
    Panse, Christian
    Wahlander, Asa
    Selevsek, Nathalie
    Grossmann, Jonas
    Wolski, Witold E.
    Schlapbach, Ralph
    PROTEOMICS, 2016, 16 (15-16) : 2183 - 2192
  • [3] Wideband PRM: Highly Accurate and Sensitive Method for High-Throughput Targeted Proteomics
    Nam, Dowoon
    Ji, Minyoung
    Kang, Chaewon
    Kim, Hokeun
    Yang, Hyunju
    Bok, Kwon Hee
    Bae, Jingi
    Hong, Jiwon
    Lee, Sang-Won
    ANALYTICAL CHEMISTRY, 2024, 96 (25) : 10219 - 10227
  • [4] Parallel reaction monitoring (PRM) and selected reaction monitoring (SRM) exhibit comparable linearity, dynamic range and precision for targeted quantitative HDL proteomics
    Ronsein, Graziella E.
    Pamir, Nathalie
    von Haller, Priska D.
    Kim, Daniel S.
    Oda, Michael N.
    Jarvik, Gail P.
    Vaisar, Tomas
    Heinecke, Jay W.
    JOURNAL OF PROTEOMICS, 2015, 113 : 388 - 399
  • [5] Applications and Developments in Targeted Proteomics: From SRM to DIA/SWATH
    Aebersold, Ruedi
    Bensimon, Ariel
    Collins, Ben C.
    Ludwig, Christina
    Sabido, Eduard
    PROTEOMICS, 2016, 16 (15-16) : 2065 - 2067
  • [6] Expediting the Development of Targeted SRM Assays: Using Data from Shotgun Proteomics to Automate Method Development
    Prakash, Amol
    Tomazela, Daniela M.
    Frewen, Barbara
    MacLean, Brendan
    Merrihew, Gennifer
    Peterman, Scott
    MacCoss, Michael J.
    JOURNAL OF PROTEOME RESEARCH, 2009, 8 (06) : 2733 - 2739
  • [7] Expediting SRM Assay Development for Large-Scale Targeted Proteomics Experiments
    Wu, Chaochao
    Shi, Tujin
    Brown, Joseph N.
    He, Jintang
    Gao, Yuqian
    Fillmore, Thomas L.
    Shukla, Anil K.
    Moore, Ronald J.
    Camp, David G., II
    Rodland, Karin D.
    Qian, Wei-Jun
    Liu, Tao
    Smith, Richard D.
    JOURNAL OF PROTEOME RESEARCH, 2014, 13 (10) : 4479 - 4487
  • [8] SRM/MRM targeted proteomics as a tool for biomarker validation and absolute quantification in human urine
    Mermelekas, George
    Vlahou, Antonia
    Zoidakis, Jerome
    EXPERT REVIEW OF MOLECULAR DIAGNOSTICS, 2015, 15 (11) : 1441 - 1454
  • [9] Comparison of targeted peptide quantification assays for reductive dehalogenases by selective reaction monitoring (SRM) and precursor reaction monitoring (PRM)
    Schiffmann, Christian
    Hansen, Rasmus
    Baumann, Sven
    Kublik, Anja
    Nielsen, Per Halkjaer
    Adrian, Lorenz
    von Bergen, Martin
    Jehmlich, Nico
    Seifert, Jana
    ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 2014, 406 (01) : 283 - 291
  • [10] Comparison of targeted peptide quantification assays for reductive dehalogenases by selective reaction monitoring (SRM) and precursor reaction monitoring (PRM)
    Christian Schiffmann
    Rasmus Hansen
    Sven Baumann
    Anja Kublik
    Per Halkjær Nielsen
    Lorenz Adrian
    Martin von Bergen
    Nico Jehmlich
    Jana Seifert
    Analytical and Bioanalytical Chemistry, 2014, 406 : 283 - 291
12345