The complete chloroplast genome of Dendrobium comatum (Orchidaceae)

被引：1
|
作者：
Liu, Feng [1 ]
Xiao, Xu [1 ]
An, Mingtai [1 ]
Li, Zhi [1 ]
机构：
[1] Guizhou Univ, Coll Forestry, Guiyang, Guizhou, Peoples R China
来源：
MITOCHONDRIAL DNA PART B-RESOURCES | 2021年 / 6卷 / 11期
基金：
中国国家自然科学基金;
关键词：
Dendrobium comatum; chloroplast genome; high-throughput sequencing; phylogenomic analysis; SEQUENCE;
D O I：
10.1080/23802359.2021.1990152
中图分类号：
Q3 [遗传学];
学科分类号：
071007 ; 090102 ;
摘要：
Dendrobium comatum is a rare orchid plant. To further its research and conservation, we reported and characterized its complete chloroplast (cp) genome by using Illumina paired-end sequencing data. We also analyzed its characteristics and studied its clustering relationships. The total chloroplast genome size was 158,008 bp, including inverted repeats (IRs) of 27,032 bp separated by a large single copy (LSC) region and a small single copy (SSC) region of 85,592 and 18,352 bp, respectively. A total of 132 genes, including 38 tRNA, 8 rRNA, and 87 protein-coding genes, were identified. Phylogenetic analysis showed that D. comatum is sister to D. kingianum with sufficient support.
引用
收藏
页码：3229 / 3230
页数：2
相关论文
共 50 条
  • [1] The complete chloroplast genome of Dendrobium pseudotenellum (Orchidaceae)
    Tan, Qing-Qin
    Zhao, Yao
    Luo, Yan
    Li, Qing-Qing
    Li, Lu
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (02): : 1880 - 1881
  • [2] The complete chloroplast genome of Dendrobium wattii (Orchidaceae)
    Wang, Yan-Ping
    Ai, Jing
    Luo, Yan
    Li, Qing-Qing
    Li, Lu
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (02): : 1325 - 1326
  • [3] The complete chloroplast genome of Dendrobium harveyanum (Orchidaceae)
    Huang, Zhi-Cong
    Pan, Yun-Yun
    Chen, Gui-Zhen
    Chen, Li Jun
    Wu, Xin-Yi
    Huang, Jie
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 3200 - 3201
  • [4] The complete chloroplast genome of Dendrobium longicornu (Orchidaceae)
    Wu, Xin-Yi
    Li, Ting-Zhang
    Chen, Gui-Zhen
    Xu, Qing
    Pan, Yun-Yun
    Chen, Li Jun
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 3776 - 3777
  • [5] Complete chloroplast genome of Dendrobium thyrsiflorum (Orchidaceae)
    Pan, Yun-Yun
    Li, Ting-Zhang
    Chen, Jian-Bing
    Huang, Jie
    Rao, Wen-Hui
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 3192 - 3193
  • [6] The complete chloroplast genome sequence of Dendrobium zhenghuoense (Orchidaceae)
    Huang, Yuan-Zhen
    Zhuang, Li-bin
    Zhai, Jun-Wen
    Lin, Wen-Jun
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 3326 - 3327
  • [7] The complete chloroplast genome of the Dendrobium strongylanthum (Orchidaceae: Epidendroideae)
    Li, Jing
    Chen, Chen
    Wang, Zhe-Zhi
    [J]. MITOCHONDRIAL DNA PART A, 2016, 27 (04) : 3048 - 3049
  • [8] The complete chloroplast genome sequence of Dendrobium chrysocrepis (Orchidaceae)
    Zhang, Jin
    Li, Chu-Ran
    Luo, Yan
    Li, Qing-Qing
    Li, Lu
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (02): : 1882 - 1883
  • [9] The complete chloroplast genome sequence of an Endangered orchid species Dendrobium bellatulum (Orchidaceae)
    Zhang, Yun-Jiao
    Ma, Cong
    Feng, Yang
    Cheng, Xing
    Song, Ji
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2018, 3 (01): : 233 - 234
  • [10] The complete chloroplast genome sequence of Dendrobium thyrsiflorum (Orchidaceae) and its phylogenetic analysis
    Zhu, Bin
    Luo, Xi
    Gao, Zuomin
    Feng, Qun
    Hu, Lijuan
    Weng, Qingbei
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 4085 - 4086
12345