Precise Segmentation of COVID-19 Infected Lung from CT Images Based on Adaptive First-Order Appearance Model with Morphological/Anatomical Constraints

被引:12
|
作者
Sharafeldeen, Ahmed [1 ]
Elsharkawy, Mohamed [1 ]
Alghamdi, Norah Saleh [2 ]
Soliman, Ahmed [1 ]
El-Baz, Ayman [1 ]
机构
[1] Univ Louisville, Bioimaging Lab, Dept Bioengn, Louisville, KY 40292 USA
[2] Princess Nourah Bint Abdulrahman Univ, Coll Comp & Informat Sci, Riyadh 11564, Saudi Arabia
关键词
computed tomography (CT); lung; chest; segmentation; COVID-19; COMPUTED-TOMOGRAPHY; DISEASE;
D O I
10.3390/s21165482
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
A new segmentation technique is introduced for delineating the lung region in 3D computed tomography (CT) images. To accurately model the distribution of Hounsfield scale values within both chest and lung regions, a new probabilistic model is developed that depends on a linear combination of Gaussian (LCG). Moreover, we modified the conventional expectation-maximization (EM) algorithm to be run in a sequential way to estimate both the dominant Gaussian components (one for the lung region and one for the chest region) and the subdominant Gaussian components, which are used to refine the final estimated joint density. To estimate the marginal density from the mixed density, a modified k-means clustering approach is employed to classify the Gaussian subdominant components to determine which components belong properly to a lung and which components belong to a chest. The initial segmentation, based on the LCG-model, is then refined by the imposition of 3D morphological constraints based on a 3D Markov-Gibbs random field (MGRF) with analytically estimated potentials. The proposed approach was tested on CT data from 32 coronavirus disease 2019 (COVID-19) patients. Segmentation quality was quantitatively evaluated using four metrics: Dice similarity coefficient (DSC), overlap coefficient, 95th-percentile bidirectional Hausdorff distance (BHD), and absolute lung volume difference (ALVD), and it achieved 95.67(+/- 1.83)%, 91.76(+/- 3.29)%, 4.86(+/- 5.01), and 2.93(+/- 2.39), respectively. The reported results showed the capability of the proposed approach to accurately segment healthy lung tissues in addition to pathological lung tissues caused by COVID-19, outperforming four current, state-of-the-art deep learning-based lung segmentation approaches.
引用
收藏
页数:20
相关论文
共 50 条
  • [1] COVID-19 lung infection segmentation from chest CT images based on CAPA-ResUNet
    Ma, Lu
    Song, Shuni
    Guo, Liting
    Tan, Wenjun
    Xu, Lisheng
    INTERNATIONAL JOURNAL OF IMAGING SYSTEMS AND TECHNOLOGY, 2023, 33 (01) : 6 - 17
  • [2] Lung Infection Segmentation for COVID-19 Pneumonia Based on a Cascade Convolutional Network from CT Images
    Ranjbarzadeh, Ramin
    Ghoushchi, Saeid Jafarzadeh
    Bendechache, Malika
    Amirabadi, Amir
    Ab Rahman, Mohd Nizam
    Saadi, Soroush Baseri
    Aghamohammadi, Amirhossein
    Forooshani, Mersedeh Kooshki
    BIOMED RESEARCH INTERNATIONAL, 2021, 2021
  • [3] Automatic COVID-19 lung infected region segmentation and measurement using CT-scans images
    Oulefki, Adel
    Agaian, Sos
    Trongtirakul, Thaweesak
    Laouar, Azzeddine Kassah
    PATTERN RECOGNITION, 2021, 114
  • [4] CovLIS-MUnet segmentation model for Covid-19 lung infection regions in CT images
    Devi, Manju
    Singh, Sukhdip
    Tiwari, Shailendra
    NEURAL COMPUTING & APPLICATIONS, 2024, 36 (13): : 7265 - 7278
  • [5] CovLIS-MUnet segmentation model for Covid-19 lung infection regions in CT images
    Manju Devi
    Sukhdip Singh
    Shailendra Tiwari
    Neural Computing and Applications, 2024, 36 : 7265 - 7278
  • [6] An Encoder–Decoder-Based Method for Segmentation of COVID-19 Lung Infection in CT Images
    Elharrouss O.
    Subramanian N.
    Al-Maadeed S.
    SN Computer Science, 2022, 3 (1)
  • [7] Inf-Net: Automatic COVID-19 Lung Infection Segmentation From CT Images
    Fan, Deng-Ping
    Zhou, Tao
    Ji, Ge-Peng
    Zhou, Yi
    Chen, Geng
    Fu, Huazhu
    Shen, Jianbing
    Shao, Ling
    IEEE TRANSACTIONS ON MEDICAL IMAGING, 2020, 39 (08) : 2626 - 2637
  • [8] MSAMS-Net: accurate lung lesion segmentation from COVID-19 CT images
    Wang, Zhengyu
    Zhu, Haijiang
    Gao, Xiaoyu
    MULTIMEDIA TOOLS AND APPLICATIONS, 2024, 83 (35) : 82849 - 82870
  • [9] An Effective Deep Neural Network for Lung Lesions Segmentation From COVID-19 CT Images
    Chen, Cheng
    Zhou, Kangneng
    Zha, Muxi
    Qu, Xiangyan
    Guo, Xiaoyu
    Chen, Hongyu
    Wang, Zhiliang
    Xiao, Ruoxiu
    IEEE TRANSACTIONS ON INDUSTRIAL INFORMATICS, 2021, 17 (09) : 6528 - 6538
  • [10] COVID-19 Infection Segmentation from Chest CT Images Based on Scale Uncertainty
    Oda, Masahiro
    Zheng, Tong
    Hayashi, Yuichiro
    Otake, Yoshito
    Hashimoto, Masahiro
    Akashi, Toshiaki
    Aoki, Shigeki
    Mori, Kensaku
    CLINICAL IMAGE-BASED PROCEDURES, DISTRIBUTED AND COLLABORATIVE LEARNING, ARTIFICIAL INTELLIGENCE FOR COMBATING COVID-19 AND SECURE AND PRIVACY-PRESERVING MACHINE LEARNING, CLIP 2021, DCL 2021, LL-COVID19 2021, PPML 2021, 2021, 12969 : 88 - 97