Insights into the Evolution of Multicellularity from the Sea Lettuce Genome

被引:131
|
作者
De Clerck, Olivier [1 ]
Kao, Shu-Min [2 ,3 ]
Bogaert, Kenny A. [1 ]
Blomme, Jonas [1 ,2 ]
Foflonker, Fatima [4 ]
Kwantes, Michiel [5 ]
Vancaester, Emmelien [2 ,3 ]
Vanderstraeten, Lisa [6 ]
Aydogdu, Eylem [2 ,3 ]
Boesger, Jens [5 ]
Califano, Gianmaria [5 ]
Charrier, Benedicte [7 ]
Clewes, Rachel [8 ]
Del Cortona, Andrea [1 ,2 ,3 ]
D'Hondt, Sofie [1 ]
Fernandez-Pozo, Noe [9 ]
Gachon, Claire M. [10 ]
Hanikenne, Marc [11 ]
Lattermann, Linda [5 ]
Leliaert, Frederik [1 ,12 ]
Liu, Xiaojie [1 ]
Maggs, Christine A. [13 ,14 ]
Popper, Zoe A. [15 ,16 ]
Raven, John A. [17 ,18 ]
Van Bel, Michiel [2 ,3 ]
Wilhelmsson, Per K. I. [9 ]
Bhattacharya, Debashish [4 ]
Coates, Juliet C. [8 ]
Rensing, Stefan A. [9 ]
Van Der Straeten, Dominique [6 ]
Vardi, Assaf [19 ]
Sterck, Lieven [2 ,3 ]
Vandepoele, Klaas [2 ,3 ,21 ]
Van de Peer, Yves [2 ,3 ,20 ,21 ]
Wichard, Thomas [5 ]
Bothwell, John H. [22 ,23 ]
机构
[1] Univ Ghent, Dept Biol, B-9000 Ghent, Belgium
[2] Univ Ghent, Dept Plant Biotechnol & Bioinformat, Technol Pk 927, B-9052 Ghent, Belgium
[3] VIB Ctr Plant Syst Biol, Technol Pk 927, B-9052 Ghent, Belgium
[4] Rutgers State Univ, Dept Biochem & Microbiol, New Brunswick, NJ 08901 USA
[5] Friedrich Schiller Univ Jena, Jena Sch Microbial Commun, Inst Inorgan & Analyt Chem, Lessingstr 8, D-07743 Jena, Germany
[6] Univ Ghent, Dept Biol, Lab Funct Plant Biol, KL Ledeganckstr 35, B-9000 Ghent, Belgium
[7] UPMC, CNRS, UMR8227, Morphogenesis Macroalgae,Stn Biol, F-29680 Roscoff, France
[8] Univ Birmingham, Sch Biosci, Edgbaston B15 2TT, W Midlands, England
[9] Univ Marburg, Fac Biol, Karl von Frisch Str 8, D-35043 Marburg, Germany
[10] Scottish Marine Inst, Scottish Assoc Marine Sci, Oban PA37 1QA, Argyll, Scotland
[11] Univ Liege, InBioS Phytosyst, B-4000 Liege, Belgium
[12] Bot Garden Meise, Nieuwelaan 38, B-1860 Meise, Belgium
[13] Queens Univ Belfast, Sch Biol Sci, Belfast BT7 1NN, Antrim, North Ireland
[14] Queens Univ Belfast, Queens Univ Marine Lab Portaferry, Belfast BT7 1NN, Antrim, North Ireland
[15] Natl Univ Ireland, Sch Nat Sci, Bot & Plant Sci, Galway, Ireland
[16] Natl Univ Ireland, Sch Nat Sci, Ryan Inst Environm Marine & Energy Res, Galway, Ireland
[17] Univ Dundee, James Hutton Inst, Div Plant Sci, Dundee DD2 5DA, Scotland
[18] Univ Western Australia, Sch Biol Sci, M048,35 Stirling Highway, Nedlands, WA 6009, Australia
[19] Weizmann Inst Sci, Dept Plant & Environm Sci, IL-76100 Rehovot, Israel
[20] Univ Pretoria, Genom Res Inst, Dept Genet, ZA-0028 Pretoria, South Africa
[21] Univ Ghent, Bioinformat Inst Ghent, Technol Pk 927, B-9052 Ghent, Belgium
[22] Univ Durham, Sch Biol & Biomed Sci, Durham DH1 3LE, England
[23] Univ Durham, Durham Energy Inst, Durham DH1 3LE, England
基金
英国生物技术与生命科学研究理事会; 美国能源部; 美国国家科学基金会;
关键词
ULVA-MUTABILIS CHLOROPHYTA; TRANSCRIPTIONAL REGULATION; GENETIC-CONTROL; GREEN; MORPHOGENESIS; ORIGIN; DIMETHYLSULFONIOPROPIONATE; IDENTIFICATION; ALIGNMENT; CONSTANS;
D O I
10.1016/j.cub.2018.08.015
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We report here the 98.5 Mbp haploid genome (12,924 protein coding genes) of Ulva mutabilis, a ubiquitous and iconic representative of the Ulvophyceae or green seaweeds. Ulva's rapid and abundant growth makes it a key contributor to coastal biogeochemical cycles; its role in marine sulfur cycles is particularly important because it produces high levels of dimethylsulfoniopropionate (DMSP), the main precursor of volatile dimethyl sulfide (DMS). Rapid growth makes Ulva attractive biomass feedstock but also increasingly a driver of nuisance "green tides.'' Ulvophytes are key to understanding the evolution of multicellularity in the green lineage, and Ulva morphogenesis is dependent on bacterial signals, making it an important species with which to study cross-kingdom communication. Our sequenced genome informs these aspects of ulvophyte cell biology, physiology, and ecology. Gene family expansions associated with multicellularity are distinct from those of freshwater algae. Candidate genes, including some that arose following horizontal gene transfer from chromalveolates, are present for the transport and metabolism of DMSP. The Ulva genome offers, therefore, new opportunities to understand coastal and marine ecosystems and the fundamental evolution of the green lineage.
引用
收藏
页码:2921 / +
页数:18
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