Different mitogenomic codon usage patterns between damselflies and dragonflies and nine complete mitogenomes for odonates

被引:27
|
作者
Guan, De-Long [1 ]
Qian, Zeng-Qiang [1 ]
Ma, Li-Bin [1 ]
Bai, Yi [2 ]
Xu, Sheng-Quan [1 ]
机构
[1] Shaanxi Normal Univ, Coll Iife Sci, Xian 710119, Shaanxi, Peoples R China
[2] Taizhou Univ, Sch Life Sci, Taizhou 317000, Peoples R China
关键词
COMPLETE MITOCHONDRIAL GENOME; ADAPTIVE EVOLUTION; SELECTION; MUTATION; EXPRESSION; PHYLOGENY; DIVERSITY; ROLES; BIAS; DNA;
D O I
10.1038/s41598-018-35760-2
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Damselflies and dragonflies, of the order Odonata, have distinct body plans and predatory abilities. Knowledge of their various evolutionary histories will allow for an understanding of the genetic and phenotypic evolution of insects. Mitogenomes are suitable materials to elucidate this, but the mitogenome of only a few odonates have been annotated. Herein, we report the complete mitogenome of nine odonates, including seven dragonflies and two damselflies, and a comprehensive analysis of the codon usage in 31 Odonata mitogenomes with the aim to estimate their evolutionary characteristics. Overall, a weak codon bias exists among odonate mitogenomes, although this favours AT-ending codons. Damselflies have a weaker codon usage bias than dragonflies, and 37 codons have significantly different usages. Both directional mutation and purifying selection shape damselfly and dragonfly mitogenomes. Although inevitable, directional mutation bias plays a minor role, whereas purifying selection pressure is the dominant evolutionary force. A higher selection pressure is observed in dragonflies than in damselflies, but it mainly acts on codon usage patterns rather than amino acid translation. Our findings suggest that dragonflies might have more efficient mitochondrial gene expression levels than damselflies, producing more proteins that support their locomotion and predatory abilities.
引用
收藏
页数:9
相关论文
共 34 条
  • [1] Different mitogenomic codon usage patterns between damselflies and dragonflies and nine complete mitogenomes for odonates
    De-Long Guan
    Zeng-Qiang Qian
    Li-Bin Ma
    Yi Bai
    Sheng-Quan Xu
    Scientific Reports, 9
  • [2] Mitogenomic Codon Usage Patterns of Superfamily Certhioidea (Aves, Passeriformes): Insights into Asymmetrical Bias and Phylogenetic Implications
    Ding, Hengwu
    Bi, De
    Han, Shiyun
    Yi, Ran
    Zhang, Sijia
    Ye, Yuanxin
    Gao, Jinming
    Yang, Jianke
    Kan, Xianzhao
    ANIMALS, 2023, 13 (01):
  • [3] Analysis of synonymous codon usage patterns in mitochondrial genomes of nine Amanita species
    Li, Qiang
    Luo, Yingyong
    Sha, Ajia
    Xiao, Wenqi
    Xiong, Zhuang
    Chen, Xiaodie
    He, Jing
    Peng, Lianxin
    Zou, Liang
    FRONTIERS IN MICROBIOLOGY, 2023, 14
  • [4] Comparative analysis of codon usage patterns in the chloroplast genomes of nine forage legumes
    Xiao, Mingkun
    Hu, Xiang
    Li, Yaqi
    Liu, Qian
    Shen, Shaobin
    Jiang, Tailing
    Zhang, Linhui
    Zhou, Yingchun
    Li, Yuexian
    Luo, Xin
    Bai, Lina
    Yan, Wei
    PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS, 2024, 30 (02) : 153 - 166
  • [5] Comparative analysis of codon usage patterns in the chloroplast genomes of nine forage legumes
    Mingkun Xiao
    Xiang Hu
    Yaqi Li
    Qian Liu
    Shaobin Shen
    Tailing Jiang
    Linhui Zhang
    Yingchun Zhou
    Yuexian Li
    Xin Luo
    Lina Bai
    Wei Yan
    Physiology and Molecular Biology of Plants, 2024, 30 : 153 - 166
  • [6] Deciphering Codon Usage Patterns in Genome of Cucumis sativus in Comparison with Nine Species of Cucurbitaceae
    Niu, Yuan
    Luo, Yanyan
    Wang, Chunlei
    Liao, Weibiao
    AGRONOMY-BASEL, 2021, 11 (11):
  • [7] The Patterns of Codon Usage between Chordates and Arthropods are Different but Co-evolving with Mutational Biases
    Kotari, Ioanna
    Kosiol, Carolin
    Borges, Rui
    MOLECULAR BIOLOGY AND EVOLUTION, 2024, 41 (05)
  • [8] Synonymous codon usage patterns in different parasitic platyhelminth mitochondrial genomes
    Chen, L.
    Yang, D. Y.
    Liu, T. F.
    Nong, X.
    Huang, X.
    Xie, Y.
    Fu, Y.
    Zheng, W. P.
    Zhang, R. H.
    Wu, X. H.
    Gu, X. B.
    Wang, S. X.
    Peng, X. R.
    Yang, G. Y.
    GENETICS AND MOLECULAR RESEARCH, 2013, 12 (01) : 587 - 596
  • [9] Analysis of synonymous codon usage patterns in different plant mitochondrial genomes
    Zhou, Meng
    Li, Xia
    MOLECULAR BIOLOGY REPORTS, 2009, 36 (08) : 2039 - 2046
  • [10] Analysis of Synonymous Codon Usage Patterns in Seven Different Citrus Species
    Xu, Chen
    Dong, Jing
    Tong, Chunfa
    Gong, Xindong
    Wen, Qiang
    Zhuge, Qiang
    EVOLUTIONARY BIOINFORMATICS, 2013, 9 : 215 - 228