Standards recommendations for the Earth BioGenome Project

被引：31

作者：

Lawniczak, Mara K. N. ^{[1
]}

Durbin, Richard ^{[1
,2
]}

Flicek, Paul ^{[1
,3
]}

Lindblad-Toh, Kerstin ^{[4
,5
]}

Wei, Xiaofeng ^{[6
]}

Archibald, John M. ^{[7
]}

Baker, William J. ^{[8
]}

Belov, Katherine ^{[9
]}

Blaxter, Mark L. ^{[1
]}

Bonet, Tomas Marques ^{[10
,11
,12
,13
]}

Childers, Anna K. ^{[14
]}

Coddington, Jonathan A.

Crandall, Keith A. ^{[15
,16
]}

Crawford, Andrew J. ^{[17
]}

Davey, Robert P. ^{[18
]}

Di Palma, Federica ^{[19
]}

Fang, Qi ^{[20
]}

Haerty, Wilfried ^{[21
]}

Hall, Neil ^{[19
,21
]}

Hoff, Katharina J. ^{[22
]}

Howe, Kerstin ^{[1
]}

Jarvis, Erich D. ^{[23
,24
]}

Johnson, Warren E. ^{[25
]}

Johnson, Rebecca N.

Kersey, Paul J. ^{[26
,27
]}

Liu, Xin ^{[6
]}

Lopez, Jose Victor ^{[28
]}

Myers, Eugene W. ^{[29
]}

Pettersson, Olga Vinnere ^{[30
]}

Phillippy, Adam M. ^{[31
]}

Poelchau, Monica F. ^{[32
]}

Pruitt, Kim D. ^{[33
]}

Rhie, Arang ^{[31
]}

Castilla-Rubio, Juan Carlos ^{[34
]}

Sahu, Sunil Kumar ^{[6
,20
,21
]}

Salmon, Nicholas A. ^{[1
]}

Soltis, Pamela S. ^{[35
]}

Swarbreck, David ^{[22
]}

Thibaud-Nissen, Francoise ^{[33
]}

Wang, Sibo ^{[6
]}

Wegrzyn, Jill L. ^{[36
,37
]}

Zhang, Guojie ^{[38
,39
,40
,41
]}

Zhang, He ^{[42
]}

Lewin, Harris A. ^{[43
,44
]}

Richards, Stephen ^{[43
]}

机构：

[1] Wellcome Sanger Inst, Wellcome Genome Campus, Hinxton CB10 1SA, England

[2] Univ Cambridge, Dept Genet, Cambridge CB3 0DH, England

[3] European Bioinformat Inst, European Mol Biol Lab, Wellcome Genome Campus, Cambridge CB10 1SD, England

[4] Broad Inst MIT & Harvard, Cambridge, MA 02142 USA

[5] Uppsala Univ, Dept Med Biochem & Microbiol, Sci Life Lab, Uppsala, Sweden

[6] China Natl GeneBank, Shenzhen 518120, Peoples R China

[7] Dalhousie Univ, Dept Biochem & Mol Biol, Halifax, NS B3H 4R2, Canada

[8] Royal Bot Gardens, Dept Accelerated Taxon, Surrey TW9 3AE, England

[9] Univ Sydney, Sch Life & Environm Sci, Fac Sci, Sydney, NSW 2006, Australia

[10] Univ Pompeau Fabra, Consejo Super Invest Cientificas, Inst Evolutionary Biol, Parc Rechercha Biomed Barcelona, Barcelona 08003, Spain

[11] Catalan Inst Res & Adv Studies, Barcelona 08010, Spain

[12] Barcelona Inst Sci & Technol, Ctr Nacl Analisi Geonom, Ctr Genom Regulat, Barcelona 08028, Spain

[13] USDA, ARS, Beltsville Agr Res Ctr, Bee Res Lab, Beltsville, MD 20705 USA

[14] Natl Museum Nat Hist, Smithsonian Inst, Washington, DC 20560 USA

[15] George Washington Univ, Computat Biol Inst, Washington, DC 20052 USA

[16] George Washington Univ, Milken Inst, Sch Publ Hlth, Dept Biostat & Bioinformat, Washington, DC 20052 USA

[17] Univ Los Andes, Dept Biol Sci, Bogota 111711, Colombia

[18] Earlham Inst, Engn Biol, Norwich Res Pk, Norwich NR4 7UZ, Norfolk, England

[19] Genome British Columbia, Vancouver, BC V5Z 0C4, Canada

[20] BGI Shenzhen, Beishan Ind Zone, Shenzhen 518083, Peoples R China

[21] Earlham Inst, Res Pk, Norwich NR4 7UZ, Norfolk, England

[22] Univ Greifswald, Ctr Funct Genom Microbes, Inst Math & Comp Sci, D-17489 Greifswald, Germany

[23] Rockefeller Univ, Vertebrate Genomes Lab, New York, NY 10065 USA

[24] HHMI, Chevy Chase, MD 20815 USA

[25] Smithsonian Conservat Biol Inst, Ctr Species Survival, Natl Zool Pk, Front Royal, VA 22630 USA

[26] Smithsonian Inst, Walter Reed Biosystemat Unit, Museum Support Ctr MRC 534, Suitland, MD 20746 USA

[27] European Bioinformat Inst, European Mol Biol Lab, Cambridge CB10 1SD, England

[28] Nova Southeastern Univ, Halmos Coll Arts & Sci, Guy Harvey Oceanog Ctr, Dania, FL 33004 USA

[29] Max Planck Inst Mol Cell Biol & Genet, Dept Syst Biol, D-01307 Dresden, Germany

[30] Uppsala Univ, Sci Life Lab Uppsala, S-75123 Uppsala, Sweden

[31] NHGRI, Genome Informat Sect, Computat & Stat Genom Branch, NIH, Bethesda, MD 20894 USA

[32] USDA ARS, Natl Agr Lib, Beltsville, MD 20705 USA

[33] Natl Ctr Biotechnol Informat, Natl Lib Med, NIH, Bethesda, MD 20894 USA

[34] Spacetime Ventures, BR-05449050 Sao Paulo, Brazil

[35] Univ Florida, Florida Museum Nat Hist, Gainesville, FL 32611 USA

[36] Univ Connecticut, Dept Ecol & Evolutionary Biol, Storrs, CT 06269 USA

[37] Univ Connecticut, Inst Syst Genom, Computat Biol Core, Storrs, CT 06269 USA

[38] Univ Copenhagen, Sect Ecol & Evolut, Dept Biol, Villum Ctr Biodivers Genom, DK-1165 Copenhagen, Denmark

[39] China Natl Genebank, BGI Shenzhen, Shenzhen 518083, Peoples R China

[40] Chinese Acad Sci, Kunming Inst Zool, State Key Lab Genet Resources & Evolut, Kunming 650223, Yunnan, Peoples R China

[41] Chinese Acad Sci, Ctr Excellence Anim Evolut & Genet, Kunming 650223, Yunnan, Peoples R China

[42] BGI Qingdao, BGI Shenzhen, Qingdao 266555, Peoples R China

[43] Univ Calif Davis, Univ Calif Davis Genome Ctr, Davis, CA 95616 USA

[44] Univ Calif Davis, Dept Evolut & Ecol, Davis, CA 95616 USA

来源：

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA | 2022年 / 119卷 / 04期

基金：

瑞典研究理事会; 美国国家科学基金会;

关键词：

Earth BioGenome Project; genomics; ethics; genome assembly; GENOME SEQUENCE;

D O I：

10.1073/pnas.2115639118

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

A global international initiative, such as the Earth BioGenome Project (EBP), requires both agreement and coordination on standards to ensure that the collective effort generates rapid progress toward its goals. To this end, the EBP initiated five technical standards committees comprising volunteer members from the global genomics scientific community: Sample Collection and Processing, Sequencing and Assembly, Annotation, Analysis, and IT and Informatics. The current versions of the resulting standards documents are available on the EBP website, with the recognition that opportunities, technologies, and challenges may improve or change in the future, requiring flexibility for the EBP to meet its goals. Here, we describe some highlights from the proposed standards, and areas where additional challenges will need to be met.

引用

页数：8

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