Characterization of domain instabilities in lipid bilayers by Karhunen-Loeve analysis

被引:1
|
作者
Deetz, Joshua D. [1 ]
Faller, Roland [1 ]
Palazoglu, Ahmet [1 ]
机构
[1] Univ Calif Davis, Dept Chem Engn & Mat Sci, Davis, CA 95616 USA
来源
关键词
principal component analysis; lipid bilayer; molecular simulation; pattern formation;
D O I
10.1016/j.bbamem.2007.12.027
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We study the stability of lipid bilayers with artificial domains. In investigating different domain structures, we identify scenarios of stable and unstable arrangements of patches of mixed phospholipids. These are then characterized using Karhunen-Loeve Expansion (KLE), a special form of Principal Components Analysis (PCA). The simulation data are interrogated using KLE to reveal spatiotemporal patterns that explain relevant motions in the bilayer system. By projecting the high-dimensional dataset onto a small number of key modes, KLE reveals specific dynamic signatures that can help distinguish and characterize various domain instability mechanisms. We find that typically very few modes are responsible for describing a mechanism of instability to a reasonable extent and can clearly distinguish between stable and unstable arrangements. Different instability modes are characterized as they exhibit unique features Re global deformation or local mixing modes. (C) 2008 Elsevier B.V. All rights reserved.
引用
收藏
页码:1154 / 1180
页数:27
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