Implications of informatics approaches in ecological research

被引:12
|
作者
Metzger, Kelsey J. [1 ]
Klaper, Rebecca [2 ]
Thomas, Michael A. [3 ]
机构
[1] Univ Minnesota Rochester, Ctr Learning Innovat, Rochester, MN 55904 USA
[2] Univ Wisconsin, Great Lakes WATER Inst, Sch Freshwater Sci, Milwaukee, WI 53204 USA
[3] Idaho State Univ, Dept Biol Sci, Pocatello, ID 83209 USA
关键词
Ecological informatics; Bioinformatics; Next-generation sequencing; Functional genomics; Gene expression; Multi-disciplinary; SET ENRICHMENT ANALYSIS; GENE-EXPRESSION; RNA-SEQ; GENOMICS; BIOLOGY; BIOINFORMATICS; MANAGEMENT; BIODIVERSITY; PROGRAM; DIFFERENTIATION;
D O I
10.1016/j.ecoinf.2010.11.003
中图分类号
Q14 [生态学(生物生态学)];
学科分类号
071012 ; 0713 ;
摘要
Rapid advances in molecular methodologies, computational modeling, GIS applications, and innovations in other fields have influenced the scope and nature of ecological studies in recent decades. Techniques from genomics previously considered primarily useful in the realm of biomedical research have been adopted and adapted for use in ecological contexts, yielding insights in underlying genetic structures of populations, environment/genome associations, classification of biodiversity, quantifying genetic variation within and between groups, comparing genome structure and gene expression. The use of comparatively inexpensive next-generation sequencing (NGS) technology to rapidly produce a large quantity of sequence data will continue to propel the use of informatics in ecological studies, including studies utilizing non-model organisms for which whole genome sequences are not yet available, and in metagenomics studies. Here, we describe the multi-disciplinary and innovative nature of recent ecological studies with informatics components, review some of the ways that informatics methods are being utilized to answer ecologically motivated questions, and explore the implications of these approaches for ecological studies. (C) 2010 Elsevier B.V. All rights reserved.
引用
收藏
页码:4 / 12
页数:9
相关论文
共 50 条
  • [1] Ecological informatics: A long-term ecological research perspective
    Michener, WK
    Brunt, JW
    Vanderbilt, KL
    [J]. 6TH WORLD MULTICONFERENCE ON SYSTEMICS, CYBERNETICS AND INFORMATICS, VOL VII, PROCEEDINGS: INFORMATION SYSTEMS DEVELOPMENT II, 2002, : 390 - 395
  • [2] RESEARCH APPROACHES FOR ECOLOGICAL SUSTAINABILITY
    LOWRANCE, R
    [J]. JOURNAL OF SOIL AND WATER CONSERVATION, 1990, 45 (01) : 51 - 54
  • [3] Tribo-informatics approaches in tribology research: A review
    Yin, Nian
    Xing, Zhiguo
    He, Ke
    Zhang, Zhinan
    [J]. FRICTION, 2023, 11 (01) : 1 - 22
  • [4] Tribo-informatics approaches in tribology research: A review
    Nian Yin
    Zhiguo Xing
    Ke He
    Zhinan Zhang
    [J]. Friction, 2023, 11 : 1 - 22
  • [5] VARIABLES, VARIABILITY, AND VARIATIONS RESEARCH - IMPLICATIONS FOR MEDICAL INFORMATICS
    HOLZEMER, WL
    REILLY, CA
    [J]. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION, 1995, 2 (03) : 183 - 190
  • [6] Directions for clinical research and genomic research into the next decade: Implications for informatics
    Rindfleisch, TC
    Brutlag, DL
    [J]. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION, 1998, 5 (05) : 404 - 411
  • [7] Informatics Approaches for Harmonized Intelligent Integration of Stem Cell Research
    Finkelstein, Joseph
    Parvanova, Irena
    Zhang, Frederick
    [J]. STEM CELLS AND CLONING-ADVANCES AND APPLICATIONS, 2020, 13 : 1 - 20
  • [8] Translational Biomedical Informatics and Pharmacometrics Approaches in the Drug Interactions Research
    Zhang, Pengyue
    Wu, Heng-Yi
    Chiang, Chien-Wei
    Wang, Lei
    Binkheder, Samar
    Wang, Xueying
    Zeng, Donglin
    Quinney, Sara K.
    Li, Lang
    [J]. CPT-PHARMACOMETRICS & SYSTEMS PHARMACOLOGY, 2018, 7 (02): : 90 - 102
  • [9] Analysing the Different Approaches in Mathematics and Informatics for Solving a Task and Educational Implications
    Nagyova, Ingrid
    [J]. INFORMATICS IN EDUCATION, 2018, 17 (01): : 61 - 75
  • [10] An overview of recent remote sensing and GIS based research in ecological informatics
    Boyd, D. S.
    Foody, G. M.
    [J]. ECOLOGICAL INFORMATICS, 2011, 6 (01) : 25 - 36