Protein-protein interactions at a glance: Protocols for the visualization of biomolecular interactions

被引:2
|
作者
Agamennone, Mariangela [1 ]
Nicoli, Alessandro [2 ]
Bayer, Sebastian [2 ]
Weber, Verena [2 ]
Borro, Luca [3 ]
Gupta, Shailendra [4 ]
Fantacuzzi, Marialuigia [1 ]
Di Pizio, Antonella [2 ]
机构
[1] Univ G dAnnunzio, Dept Pharm, Chieti, Italy
[2] Tech Univ Munich, Leibniz Inst Food Syst Biol, Freising Weihenstephan, Germany
[3] Bambino Gesu Pediat Hosp, IRCCS, Adv Cardiovasc Imaging Unit, Dept Imaging, Rome, Italy
[4] Univ Rostock, Dept Syst Biol & Bioinformat, Rostock, Germany
来源
关键词
WEB SERVER; COUPLED RECEPTORS; DOCKING; P53; PREDICTION; DYNAMICS; TRANSDUCERS; PRINCIPLES; COMPLEXES; LIGANDS;
D O I
10.1016/bs.mcb.2021.06.012
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Protein-protein interactions (PPIs) play a key role in many biological processes and are intriguing targets for drug discovery campaigns. Advancements in experimental and computational techniques are leading to a growth of data accessibility, and, with it, an increased need for the analysis of PPIs. In this respect, visualization tools are essential instruments to represent and analyze biomolecular interactions. In this chapter, we reviewed some of the available tools, highlighting their features, and describing their functions with practical information on their usage.
引用
收藏
页码:271 / 307
页数:37
相关论文
共 50 条
  • [1] Ontological visualization of protein-protein interactions
    Drabkin, HJ
    Hollenbeck, C
    Hill, DP
    Blake, JA
    [J]. BMC BIOINFORMATICS, 2005, 6
  • [2] Ontological visualization of protein-protein interactions
    Drabkin, Harold J.
    Hollenbeck, Christopher
    Hill, David P.
    Blake, Judith A.
    [J]. BMC BIOINFORMATICS, 2005, 6 (01):
  • [3] Ontological visualization of protein-protein interactions
    Harold J Drabkin
    Christopher Hollenbeck
    David P Hill
    Judith A Blake
    [J]. BMC Bioinformatics, 6 (1)
  • [4] Identification and visualization of protein-protein interactions in protein-protein complex structure
    Lee, Jung
    You, Tian
    Zhang, James
    Gutell, Robin
    [J]. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2019, 258
  • [5] Visualization of in vivo protein-protein interactions in plants
    Strotmann, Vivien, I
    Stahl, Yvonne
    [J]. JOURNAL OF EXPERIMENTAL BOTANY, 2022, 73 (12) : 3866 - 3880
  • [6] Exploring protein-protein interactions by peptide docking protocols
    Weng, GZ
    [J]. G PROTEIN PATHWAYS PART B: G PROTEINS AND THEIR REGULATORS, 2002, 344 : 577 - 586
  • [7] Visualization and quantification of protein-protein interactions in cells and tissues
    Mats Gullberg
    Ann-Catrin Andersson
    [J]. Nature Methods, 2010, 7 (6) : v - vi
  • [8] Protein-protein interactions
    Creeth, J. M.
    [J]. NATURE, 1981, 294 (5839) : 384 - 384
  • [9] Protein-protein interactions
    Alexov, Emil
    [J]. CURRENT PHARMACEUTICAL BIOTECHNOLOGY, 2008, 9 (02) : 55 - 56
  • [10] PROTEIN-PROTEIN INTERACTIONS
    ONCLEY, JL
    ELLENBOGEN, E
    GITLIN, D
    GURD, FRN
    [J]. JOURNAL OF PHYSICAL CHEMISTRY, 1952, 56 (01): : 85 - 92