Recent developments in multiscale free energy simulations

被引:5
|
作者
Barros, Emilia P. [1 ]
Ries, Benjamin [1 ]
Boselt, Lennard [1 ]
Champion, Candide [1 ]
Riniker, Sereina [1 ]
机构
[1] Swiss Fed Inst Technol, Lab Phys Chem, Vladimir Prelog Weg 2, CH-8093 Zurich, Switzerland
关键词
MOLECULAR-DYNAMICS SIMULATIONS; BINDING FREE-ENERGIES; STATISTICAL-MECHANICS; WATER;
D O I
10.1016/j.sbi.2021.08.003
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Physics-based free energy simulations enable the rigorous calculation of properties, such as conformational equilibria, solvation or binding free energies. While historically most applications have occurred at the atomistic level of resolution, a range of advances in the past years make it possible now to reliably cross the temporal, spatial and theory scales for the modeling of complex systems or the efficient prediction of results at the accuracy level of expensive quantum-mechanical calculations. In this mini-review, we discuss recent methodological advances as well as opportunities opened up by the introduction of machine learning approaches, which tackle the diverse challenges across the different scales, improve the accuracy and feasibility, and push the boundaries of multiscale free energy simulations.
引用
收藏
页码:55 / 62
页数:8
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