Genetic Identification of Cinnamomum Species Based on Partial Internal Transcribed Spacer 2 of Ribosomal DNA

被引:0
|
作者
Lee, Shih-Chieh [1 ]
Lee, Chang-Hui [2 ]
Lin, Min-Yi [2 ]
Ho, Kuen-Yih [3 ]
机构
[1] Da Yeh Univ, Dept Bioind & Technol, Changhua 51591, Taiwan
[2] Chinese Culture Univ, Dept Forestry & Nat Conservat, Taipei 11114, Taiwan
[3] Natl Chiayi Univ, Dept Forestry & Nat Resources, Chiayi 60004, Taiwan
关键词
Cinnamomum spp; molecular identification; internal transcribed spacer2 (ITS2); phylogenesis; AUTHENTICATION; LEAVES; HERBS; OIL;
D O I
暂无
中图分类号
TS2 [食品工业];
学科分类号
0832 ;
摘要
The present study investigates the genetic identification of Cinnamomum species by analyzing the nucleotide sequences of the partial non-coding internal transcribed space! 2 (ITS2) of ribosomal genes The genetic diversity of the five Cinnamomum species (Cinnamomum cassia. C zeylamcum, C louren C osmophloeum and C burmannu) was studied using polymerase chant reaction (PCR) amplification and a DNA sequencing method to molecularly identify the tested specimens Phylogenetic trees were constructed using several clustering methods, including unweighted pair-group method with arithmetic average (UPGMA), neighbor-joining. (NJ) and maximum evolution (ME) The eleven test samples were clustered into three major groups based on partial ITS2 sequences The phylogenetic results showed that C osmophloeum, and C burmann ale phylogenetically related to each other and that both ate inure closely related to C cassia Based on our results, there is enough sequence variation within the sequenced ITS2 regions to Identify individual specimens among the five tested Cinnamomum species Therefore, these ITS2 regions could be adopted as a molecular marker for differentiating among C cassia, C zeylamcum, C lour-cum, C osmophloem and C burmannu
引用
收藏
页码:225 / 231
页数:7
相关论文
共 50 条
  • [1] Identification of Dendrobium Species Used for Herbal Medicines Based on Ribosomal DNA Internal Transcribed Spacer Sequence
    Takamiya, Tomoko
    Wongsawad, Pheravut
    Tajima, Natsuko
    Shoda, Nao
    Lu, Jun Feng
    Wen, Chi Luan
    Wu, Jin Bin
    Handa, Takashi
    Iijima, Hiroshi
    Kitanaka, Susumu
    Yukawa, Tomohisa
    BIOLOGICAL & PHARMACEUTICAL BULLETIN, 2011, 34 (05) : 779 - 782
  • [2] Determination of the genetic relationship of Dendrobium species (Orchidaceae) in Taiwan based on the sequence of the internal transcribed spacer of ribosomal DNA
    Tsai, CC
    Peng, CI
    Huang, SC
    Huang, PL
    Chou, CH
    SCIENTIA HORTICULTURAE, 2004, 101 (03) : 315 - 325
  • [3] Authentication of medicinal Dendrobium species by the internal transcribed spacer of ribosomal DNA
    Lau, DTW
    Shaw, PC
    Wang, J
    But, PPH
    PLANTA MEDICA, 2001, 67 (05) : 456 - 460
  • [4] Ribosomal DNA internal transcribed spacer 1 and internal transcribed spacer 2 regions as targets for molecular identification of medically important Zanthoxylum schinifolium
    Yan-Lin, Sun
    Wan-Geun, Park
    Oh-Woung, Kwon
    Soon-Kwan, Hong
    AFRICAN JOURNAL OF BIOTECHNOLOGY, 2010, 9 (30): : 4661 - 4673
  • [5] Identification of Vietnamese Ochna integerrima (Lour.) Merr Species Based on Ribosomal DNA Internal Transcribed Spacer Sequence
    Dang Hoang Trang
    Dang Van Dong
    Bui Huu Chung
    Dong Huy Gioi
    Tran Dang Khanh
    INTERNATIONAL LETTERS OF NATURAL SCIENCES, 2018, 68 : 9 - 18
  • [6] Genetic polymorphism of Japanese cultivated Rheum species in the internal transcribed spacer region of nuclear ribosomal DNA
    Mai Asanuma
    Shu Zhu
    Naoki Okura
    Shao-Qing Cai
    Kayo Yoshimatsu
    Katsuko Komatsu
    Journal of Natural Medicines, 2019, 73 : 541 - 554
  • [7] Genetic polymorphism of Japanese cultivated Rheum species in the internal transcribed spacer region of nuclear ribosomal DNA
    Asanuma, Mai
    Zhu, Shu
    Okura, Naoki
    Cai, Shao-Qing
    Yoshimatsu, Kayo
    Komatsu, Katsuko
    JOURNAL OF NATURAL MEDICINES, 2019, 73 (03) : 541 - 554
  • [8] Phylogenetic relationship of China Dendrobium species based on the sequence of the internal transcribed spacer of ribosomal DNA
    Yuan, Z. -Q.
    Zhang, J. -Y.
    Liu, T.
    BIOLOGIA PLANTARUM, 2009, 53 (01) : 155 - 158
  • [9] Phylogenetic analysis of Kengyilia species based on nuclear ribosomal DNA internal transcribed spacer sequences
    Zeng, J.
    Zhang, L.
    Fan, X.
    Zhang, H. Q.
    Yang, R. W.
    Zhou, Y. H.
    BIOLOGIA PLANTARUM, 2008, 52 (02) : 231 - 236
  • [10] The internal transcribed spacer of ribosomal DNA as a marker for identifying species and hybrids of the Oncidiinae
    Tsai, CC
    Huang, SC
    JOURNAL OF HORTICULTURAL SCIENCE & BIOTECHNOLOGY, 2001, 76 (06): : 674 - 680