JBrowseR: an R interface to the JBrowse 2 genome browser

被引：10

作者：

Hershberg, Elliot A. ^{[1
]}

Stevens, Garrett ^{[1
]}

Diesh, Colin ^{[1
]}

Xie, Peter ^{[1
]}

Martinez, Teresa De Jesus ^{[1
]}

Buels, Robert ^{[1
]}

Stein, Lincoln ^{[2
]}

Holmes, Ian ^{[1
]}

机构：

[1] Univ Calif Berkeley, Dept Bioengn, Berkeley, CA 94720 USA

[2] Ontario Inst Canc Res, Adapt Oncol, Toronto, ON M5G 0A3, Canada

来源：

BIOINFORMATICS | 2021年 / 37卷 / 21期

关键词：

D O I：

10.1093/bioinformatics/btab459

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Motivation: Genome browsers are an essential tool in genome analysis. Modern genome browsers enable complex and interactive visualization of a wide variety of genomic data modalities. While such browsers are very powerful, they can be challenging to configure and program for bioinformaticians lacking expertise in web development. Results: We have developed an R package that provides an interface to the JBrowse 2 genome browser. The package can be used to configure and customize the browser entirely with R code. The browser can be deployed from the R console, or embedded in Shiny applications or R Markdown documents.

引用

页码：3914 / 3915

页数：2

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