High-Dimensional Mediation Analysis With Confounders in Survival Models

被引:5
|
作者
Yu, Zhangsheng [1 ,2 ,3 ]
Cui, Yidan [1 ,2 ]
Wei, Ting [1 ,2 ]
Ma, Yanran [1 ,2 ]
Luo, Chengwen [1 ,2 ]
机构
[1] Shanghai Jiao Tong Univ, Sch Life Sci & Biotechnol, Dept Bioinformat & Biostat, Shanghai, Peoples R China
[2] Shanghai Jiao Tong Univ, SJTU Yale Joint Ctr Biostat, Shanghai, Peoples R China
[3] Shanghai Jiao Tong Univ, Clin Res Inst, Sch Med, Shanghai, Peoples R China
关键词
high-dimensional mediators; confounders; survival model; mediation analysis; propensity score; REGRESSION-MODELS; CAUSAL; OUTCOMES; CANCER;
D O I
10.3389/fgene.2021.688871
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Mediation analysis is a common statistical method for investigating the mechanism of environmental exposures on health outcomes. Previous studies have extended mediation models with a single mediator to high-dimensional mediators selection. It is often assumed that there are no confounders that influence the relations among the exposure, mediator, and outcome. This is not realistic for the observational studies. To accommodate the potential confounders, we propose a concise and efficient high-dimensional mediation analysis procedure using the propensity score for adjustment. Results from simulation studies demonstrate the proposed procedure has good performance in mediator selection and effect estimation compared with methods that ignore all confounders. Of note, as the sample size increases, the performance of variable selection and mediation effect estimation is as well as the results shown in the method which include all confounders as covariates in the mediation model. By applying this procedure to a TCGA lung cancer data set, we find that lung cancer patients who had serious smoking history have increased the risk of death via the methylation markers cg21926276 and cg20707991 with significant hazard ratios of 1.2093 (95% CI: 1.2019-1.2167) and 1.1388 (95% CI: 1.1339-1.1438), respectively.
引用
下载
收藏
页数:10
相关论文
共 50 条
  • [1] High-dimensional mediation analysis in survival models
    Luo, Chengwen
    Fa, Botao
    Yan, Yuting
    Wang, Yang
    Zhou, Yiwang
    Zhang, Yue
    Yu, Zhangsheng
    PLOS COMPUTATIONAL BIOLOGY, 2020, 16 (04)
  • [2] Double machine learning for partially linear mediation models with high-dimensional confounders
    Yang, Jichen
    Shao, Yujing
    Liu, Jin
    Wang, Lei
    Neurocomputing, 2025, 614
  • [3] Linear high-dimensional mediation models adjusting for confounders using propensity score method
    Luo, Linghao
    Yan, Yuting
    Cui, Yidan
    Yuan, Xin
    Yu, Zhangsheng
    FRONTIERS IN GENETICS, 2022, 13
  • [4] Dissecting the colocalized GWAS and eQTLs with mediation analysis for high-dimensional exposures and confounders
    Zhang, Qi
    Yang, Zhikai
    Yang, Jinliang
    BIOMETRICS, 2024, 80 (02)
  • [5] Mediation analysis for survival data with high-dimensional mediators
    Zhang, Haixiang
    Zheng, Yinan
    Hou, Lifang
    Zheng, Cheng
    Liu, Lei
    BIOINFORMATICS, 2021, 37 (21) : 3815 - 3821
  • [6] Instrumental variable-based high-dimensional mediation analysis with unmeasured confounders for survival data in the observational epigenetic study
    Chen, Fangyao
    Hu, Weiwei
    Cai, Jiaxin
    Chen, Shiyu
    Si, Aima
    Zhang, Yuxiang
    Liu, Wei
    FRONTIERS IN GENETICS, 2023, 14
  • [7] Group inference for high-dimensional mediation models
    Ke Yu
    Xu Guo
    Shan Luo
    Statistics and Computing, 2025, 35 (3)
  • [8] High-Dimensional Mediation Analysis Based on Additive Hazards Model for Survival Data
    Cui, Yidan
    Luo, Chengwen
    Luo, Linghao
    Yu, Zhangsheng
    FRONTIERS IN GENETICS, 2021, 12
  • [9] High-dimensional mediation analysis for continuous outcome with confounders using overlap weighting method in observational epigenetic study
    Hu, Weiwei
    Chen, Shiyu
    Cai, Jiaxin
    Yang, Yuhui
    Yan, Hong
    Chen, Fangyao
    BMC MEDICAL RESEARCH METHODOLOGY, 2024, 24 (01)
  • [10] CoxMKF: a knockoff filter for high-dimensional mediation analysis with a survival outcome in epigenetic studies
    Tian, Peixin
    Yao, Minhao
    Huang, Tao
    Liu, Zhonghua
    BIOINFORMATICS, 2022, 38 (23) : 5229 - 5235