The X-Ray Crystal Structure of Glutathionylcobalamin Revealed

被引:25
|
作者
Hannibal, Luciana [1 ]
Smith, Clyde A. [2 ]
Jacobsen, Donald W. [1 ,3 ]
机构
[1] Cleveland Clin, Lerner Res Inst, Dept Cell Biol, Cleveland, OH 44195 USA
[2] Stanford Univ, Stanford Synchrotron Radiat Lightsource, Menlo Pk, CA 94025 USA
[3] Case Western Reserve Univ, Dept Mol Med, Cleveland Clin, Lerner Coll Med, Cleveland, OH 44106 USA
基金
美国国家卫生研究院;
关键词
CO-S BOND; METHYLMALONIC ACIDURIA; COBALAMINS; VITAMIN-B-12; CHEMISTRY; HOMOCYSTINURIA; IDENTIFICATION; COENZYME; CBLC; METHYLCOBALAMIN;
D O I
10.1021/ic101173b
中图分类号
O61 [无机化学];
学科分类号
070301 ; 081704 ;
摘要
The first evidence of a complex between glutathione and cobalamin, glutathionylcobalamin (GSCbl), was presented by Wagner and Bemhauer more than 40 years ago (Ann. N.Y. Acad. Sd. 1964, 112, 580). More recently, NMR and EXAFS solution studies by Brown et al. (Biochemistry 1993, 32, 8421) and Scheuring et al. (Biochemistry 1994, 33, 6310), respectively, provided evidence that the glutathionyl moiety in GSCbl is bound to the cobalt center via a Co-S bond. Despite continued efforts, the structural analysis of glutathionylcobalamin in the solid state has remained elusive. Here, we report the first atomic resolution crystal structure of GSCbl, refined to a crystallographic R factor of 0.0683. The glutathione moiety is bound to the cobalt center through the sulfur atom as expected, with a Co-S bond distance of 2.295(1) angstrom. This distance agrees with the distance obtained from the EXAFS analysis of GSCbl (2.280(5) angstrom). However, the bond to the axial alpha-5,6-dimethylbenzimidazole base (DMB), 2.074(3) angstrom, is significantly shorter than that determined from the EXAFS measurements (Co-N3B = 2.15(3) angstrom). The corrin fold angle is 24.7, the highest ever reported for a cobalamin structure, and points in the direction of the beta face of the comin, toward the glutathione (GS(-)). The GS(-) ligand has been modeled in two conformations, each featuring distinct hydrogen bonding interactions. In both conformations, the cc-carboxylate group of the GS(-) ligand interacts with the generally rigid side chain a of the cobalamin molecule, resulting in two distinct conformations. A comparison with the structure of other thiolatocobalamins revealed high similarity in the positions of the atoms in the cysteinyl moiety, the fold of the coffin rings, and the Co-S bond distances.
引用
收藏
页码:9921 / 9927
页数:7
相关论文
共 50 条
  • [2] X-Ray Crystal Structure of a Chromatosome
    Davey, Curt A.
    Adhireksan, Zenita
    Bao, Qiuye
    Padavattan, Sivaraman
    [J]. ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2016, 72 : S53 - S53
  • [3] Synthesis, characterization, solution stability, and X-ray crystal structure of the thiolatocobalamin γ-glutamylcysteinylcobalamin, a dipeptide analogue of glutathionylcobalamin:: Insights into the enhanced Co-S bond stability of the natural product glutathionylcobalamin
    Suto, RK
    Brasch, NE
    Anderson, OP
    Finke, RG
    [J]. INORGANIC CHEMISTRY, 2001, 40 (12) : 2686 - 2692
  • [4] STRUCTURE OF CELLULOSE AS REVEALED BY OPTICAL AND X-RAY METHODS
    Lyons, W. James
    [J]. SCIENTIFIC MONTHLY, 1942, 54 : 238 - 246
  • [5] New superlattice crystal structure in KCuF3 revealed by X-ray diffraction experiments
    Hidaka, M
    Eguchi, T
    Yamada, I
    [J]. JOURNAL OF THE PHYSICAL SOCIETY OF JAPAN, 1998, 67 (07) : 2488 - 2494
  • [6] Mechanism of intracellular allosteric β2AR antagonist revealed by X-ray crystal structure
    Liu, Xiangyu
    Ahn, Seungkirl
    Kahsai, Alem W.
    Meng, Kai-Cheng
    Latorraca, Naomi R.
    Pani, Biswaranjan
    Venkatakrishnan, A. J.
    Masoudi, Ali
    Weis, William I.
    Dror, Ron O.
    Chen, Xin
    Lefkowitz, Robert J.
    Kobilka, Brian K.
    [J]. NATURE, 2017, 548 (7668) : 480 - +
  • [7] Mechanism of intracellular allosteric β2AR antagonist revealed by X-ray crystal structure
    Xiangyu Liu
    Seungkirl Ahn
    Alem W. Kahsai
    Kai-Cheng Meng
    Naomi R. Latorraca
    Biswaranjan Pani
    A. J. Venkatakrishnan
    Ali Masoudi
    William I. Weis
    Ron O. Dror
    Xin Chen
    Robert J. Lefkowitz
    Brian K. Kobilka
    [J]. Nature, 2017, 548 : 480 - 484
  • [8] X-RAY CRYSTAL STRUCTURE OF DICHLOROPHTHALOCYANINATOTIN(IV)
    ROGERS, D
    OSBORN, RS
    [J]. JOURNAL OF THE CHEMICAL SOCIETY D-CHEMICAL COMMUNICATIONS, 1971, (15): : 840 - &
  • [9] X-RAY INVESTIGATION OF THE CRYSTAL STRUCTURE OF CHKALOVITE
    PJATENKO, JA
    BOKY, GB
    BELOV, NV
    [J]. DOKLADY AKADEMII NAUK SSSR, 1956, 108 (06): : 1077 - 1080
  • [10] CRYSTAL STRUCTURE ANALYSIS BY X-RAY AND NEUTRONS
    HAMILTON, WC
    [J]. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 1969, (SEP): : CH3 - &