Pediatric Sarcomas: The Next Generation of Molecular Studies

被引:0
|
作者
Giannikopoulos, Petros [1 ]
Parham, David M. [2 ,3 ]
机构
[1] Univ Calif Berkeley, Innovat Genom Inst, Berkeley, CA 94704 USA
[2] Childrens Hosp Los Angeles, Dept Anat Pathol, Los Angeles, CA 90027 USA
[3] Univ Southern Calif, Keck Sch Med, Dept Pathol, Los Angeles, CA 90033 USA
关键词
pediatric sarcoma; molecular genetics; technology; scRNA seq; spatial multi-omics; high-throughput functional genomics; CRISPR-Cas9; specimen annotation; SOFT-TISSUE SARCOMAS; WIDE CRISPR SCREEN; GENETIC SCREENS; EWING SARCOMA; INTRATUMORAL HETEROGENEITY; DEVELOPMENTAL TRAJECTORIES; INTERNATIONAL SOCIETY; RISK RHABDOMYOSARCOMA; SOLID TUMORS; RNA;
D O I
10.3390/cancers14102515
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Pediatric sarcomas constitute one of the largest groups of childhood cancers, following hematopoietic, neural, and renal lesions. Partly because of their diversity, they continue to offer challenges in diagnosis and treatment. In spite of the diagnostic, nosologic, and therapeutic gains made with genetic technology, newer means for investigation are needed. This article reviews emerging technology being used to study human neoplasia and how these methods might be applicable to pediatric sarcomas. Methods reviewed include single cell RNA sequencing (scRNAseq), spatial multi-omics, high-throughput functional genomics, and clustered regularly interspersed short palindromic sequence-Cas9 (CRISPR-Cas9) technology. In spite of these advances, the field continues to be challenged by a dearth of properly annotated materials, particularly from recurrences and metastases and pre- and post-treatment samples.
引用
收藏
页数:17
相关论文
共 50 条
  • [1] Next generation sequencing of synovial sarcomas
    Vlenterie, Myrella
    Hillebrandt-Roeffen, Melissa H. S.
    Flucke, Uta E.
    Groenen, Patricia J. T. A.
    Tops, Bastiaan B. J.
    Van Der Graaf, Winette T. A.
    Versleijen-Jonkers, Yvonne M. H.
    JOURNAL OF CLINICAL ONCOLOGY, 2015, 33 (15)
  • [2] Genomic Characterization of Pediatric Bone Sarcomas by Next Generation Sequencing, Utility for Clinical Management
    Gutierrez-Jimeno, M.
    Alba-Pavon, P.
    Imizcoz, T.
    Echebarria-Barona, A.
    Alana, L.
    Villate, O.
    Garcia-Obregon, S.
    Zaldumbide, L.
    Mosteiro, L.
    Panizo, E.
    Catalan, A.
    De Pedro, J.
    Gonzalez-Urdiales, P.
    Lopez-Almaraz, R.
    Adan, R.
    Garcia-Ariza, M.
    Astigarraga, I.
    Patino Garcia, A.
    PEDIATRIC BLOOD & CANCER, 2021, 68 : S250 - S250
  • [3] IDENTIFICATION OF POTENTIALLY PATHOGENIC VARIANTS IN CANCER PREDISPOSITION GENES IN PEDIATRIC SARCOMAS BY NEXT GENERATION SEQUENCING
    Alba-Pavon, Piedad
    Alana, Lide
    Gutierrez-Jimeno, Miriam
    Echebarria-Barona, Aizpea
    Imizcoz, Teresa
    Zaldumbide, Laura
    Mosteiro, Lorena
    Garcia-Obregon, Susana
    Panizo, Elena
    Gonzalez-Urdiales, Paula
    Lopez-Almaraz, Ricardo
    De Pedro, Jimena
    Adan-Pedroso, Rosa
    Garcia-Ariza, Miguel
    Astigarraga, Itziar
    Patino-Garcia, Ana
    Villate, Olatz
    PEDIATRIC BLOOD & CANCER, 2022, 69 : S237 - S238
  • [4] Molecular profiling from next-generation sequencing (NGS) reveals new potential therapeutic targets in patients with pediatric-type sarcomas
    Conley, A. P.
    Aukhadieva, A.
    Zhuk, I.
    Voropaeva, M.
    Novokreshchenova, A.
    Shevkoplias, A. E.
    Zirov, K.
    Makarova, A.
    Dubrovskaya, A.
    Nadiryan, A.
    Balabanian, L.
    Bagaev, A.
    Choy, E.
    Ratan, R.
    Bednyagin, L.
    Chawla, S. P.
    ANNALS OF ONCOLOGY, 2024, 35 : S1057 - S1057
  • [5] The Role of Next-Generation Sequencing in Sarcomas: Evolution From Light Microscope to Molecular Microscope
    Roman Groisberg
    Jason Roszik
    Anthony Conley
    Shreyaskumar R. Patel
    Vivek Subbiah
    Current Oncology Reports, 2017, 19
  • [6] The Role of Next-Generation Sequencing in Sarcomas: Evolution From Light Microscope to Molecular Microscope
    Groisberg, Roman
    Roszik, Jason
    Conley, Anthony
    Patel, Shreyaskumar R.
    Subbiah, Vivek
    CURRENT ONCOLOGY REPORTS, 2017, 19 (12)
  • [7] Clinical next-generation sequencing in sarcomas.
    Groisberg, Roman
    Hong, David S.
    Janku, Filip
    Piha-Paul, Sarina Anne
    Ravi, Vinod
    Benjamin, Robert S.
    Patel, Shreyaskumar
    Somaiah, Neeta
    Conley, Anthony Paul
    Herzog, Cynthia E.
    Meric-Bernstam, Funda
    Subbiah, Vivek
    JOURNAL OF CLINICAL ONCOLOGY, 2016, 34 (15)
  • [8] The Molecular Landscape of Pediatric Brain Tumors in the Next-Generation Sequencing Era
    Marlo R. Firme
    Marco A. Marra
    Current Neurology and Neuroscience Reports, 2014, 14
  • [9] The Molecular Landscape of Pediatric Brain Tumors in the Next-Generation Sequencing Era
    Firme, Marlo R.
    Marra, Marco A.
    CURRENT NEUROLOGY AND NEUROSCIENCE REPORTS, 2014, 14 (09)
  • [10] Targeted next generation sequencing of sarcomas for identification of therapeutic targets
    Ravi, Vinod
    Ali, Siraj M.
    Ramesh, Naveen
    Meric-Bernstam, Funda
    Palmer, Gary A.
    Hwu, Patrick
    Patel, Shreyaskumar
    Futreal, Andrew
    JOURNAL OF CLINICAL ONCOLOGY, 2013, 31 (15)