Electrostatic control of photoisomerization in the photoactive yellow protein chromophore:: Ab initio multiple spawning dynamics

被引:53
|
作者
Ko, Chaehyuk [1 ,2 ]
Virshup, Aaron M. [3 ]
Martinez, Todd J. [1 ,2 ]
机构
[1] Univ Illinois, Dept Chem, Urbana, IL 61801 USA
[2] Univ Illinois, Beckman Inst, Urbana, IL 61801 USA
[3] Univ Illinois, Dept Phys, Urbana, IL 61801 USA
基金
美国国家科学基金会;
关键词
D O I
10.1016/j.cplett.2008.05.029
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The excited state dynamics of an anionic model photoactive yellow protein (PYP) chromophore have been investigated using the ab initio multiple spawning ( AIMS) method. We observe two isomerization products, differing in the bond about which isomerization takes place. We also carried out AIMS simulations including a single point charge to mimic the Arg52 residue which is present in the protein environment. We show that a single point charge is sufficient to change the photoproduct distribution such that isomerization is restricted to only one of the two bonds where isomerization is observed in the isolated chromophore. These results corroborate recent speculations concerning the role of Arg52 in the photocycle of PYP. (C) 2008 Elsevier B.V. All rights reserved.
引用
收藏
页码:272 / 277
页数:6
相关论文
共 50 条
  • [1] Ab Initio Excited-State Dynamics of the Photoactive Yellow Protein Chromophore
    Ko, Chaehyuk
    Levine, Benjamin
    Manohar, Leslie
    Olsen, Seth
    Werner, Hans-Joachim
    Martinez, Todd J.
    Toniolo, A.
    Journal of the American Chemical Society, 2003, 125 (42): : 12710 - 12711
  • [2] Ab initio excited-state dynamics of the photoactive yellow protein chromophore
    Ko, C
    Levine, B
    Toniolo, A
    Manohar, L
    Olsen, S
    Werner, HJ
    Martínez, TJ
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2003, 125 (42) : 12710 - 12711
  • [3] Steric and electrostatic effects on photoisomerization dynamics using QM/MM ab initio multiple spawning
    Virshup, Aaron M.
    Levine, Benjamin G.
    Martinez, Todd J.
    THEORETICAL CHEMISTRY ACCOUNTS, 2014, 133 (07) : 1 - 11
  • [4] Steric and electrostatic effects on photoisomerization dynamics using QM/MM ab initio multiple spawning
    Aaron M. Virshup
    Benjamin G. Levine
    Todd J. Martínez
    Theoretical Chemistry Accounts, 2014, 133
  • [5] Role of Photoisomerization on the Photodetachment of the Photoactive Yellow Protein Chromophore
    Henley, Alice
    Patel, Anand M.
    Parkes, Michael A.
    Anderson, James C.
    Fielding, Helen H.
    JOURNAL OF PHYSICAL CHEMISTRY A, 2018, 122 (41): : 8222 - 8228
  • [6] Photoisomerization and photoionization of the photoactive yellow protein chromophore in solution
    Larsen, DS
    Vengris, M
    van Stokkum, IHM
    van der Horst, MA
    de Weerd, FL
    Hellingwerf, KJ
    van Grondelle, R
    BIOPHYSICAL JOURNAL, 2004, 86 (04) : 2538 - 2550
  • [7] Kinetic modeling of the photoisomerization of the chromophore in the photoactive yellow protein
    Yurkov, II
    Eremin, VV
    Kuz'menko, NE
    RUSSIAN JOURNAL OF PHYSICAL CHEMISTRY, 2005, 79 (12): : 2029 - 2033
  • [8] Protein driven photoisomerization reaction: Ab initio QM/MM study of photoactive yellow protein
    Yamada, A
    Ishikura, T
    Yamato, T
    BIOPHYSICAL JOURNAL, 2003, 84 (02) : 270A - 270A
  • [9] PHYS 35-Ab initio excited state dynamics of a model anionic chromophore of photoactive yellow protein
    Ko, Chaehyuk
    Martinez, Todd J.
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2006, 232
  • [10] Ab initio photoisomerization dynamics of a simple retinal chromophore model
    Vreven, T
    Bernardi, F
    Garavelli, M
    Olivucci, M
    Robb, MA
    Schlegel, HB
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1997, 119 (51) : 12687 - 12688