Stochastic simulations of the origins and implications of long-tailed distributions in gene expression

被引:39
|
作者
Krishna, S
Banerjee, B
Ramakrishnan, TV
Shivashankar, GV [1 ]
机构
[1] Tata Inst Fundamental Res, Natl Ctr Biol Sci, Bangalore 560065, Karnataka, India
[2] Banaras Hindu Univ, Varanasi 221005, Uttar Pradesh, India
[3] Indian Inst Sci, Dept Phys, Bangalore 560012, Karnataka, India
[4] Raman Res Inst, Bangalore 560080, Karnataka, India
关键词
fluctuations; genetic switches; single cell;
D O I
10.1073/pnas.0406415102
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Gene expression noise results in protein number distributions ranging from long-tailed to Gaussian. We show how long-tailed distributions arise from a stochastic model of the constituent chemical reactions and suggest that, in conjunction with cooperative switches, they lead to more sensitive selection of a subpopulation of cells with high protein number than is possible with Gaussian distributions. Single-cell-tracking experiments are presented to validate some of the assumptions of the stochastic simulations. We also examine the effect of DNA looping on the shape of protein distributions. We further show that when switches are incorporated in the regulation of a gene via a feedback loop, the distributions can become bimodal. This might explain the bimodal distribution of certain morphogens during early embryogenesis.
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页码:4771 / 4776
页数:6
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