Integrative Multi-Omics Approaches in Cancer Research: From Biological Networks to Clinical Subtypes

被引:49
|
作者
Heo, Yong Jin [1 ,2 ]
Hwa, Chanwoong [1 ]
Lee, Gang-Hee [1 ]
Park, Jae-Min [1 ]
An, Joon-Yong [1 ,2 ]
机构
[1] Korea Univ, Coll Hlth Sci, Sch Biosyst & Biomed Sci, Seoul 02841, South Korea
[2] Korea Univ, Dept Integrated Biomed & Life Sci, Seoul 02841, South Korea
关键词
cancer research; genomics; multi-omics approach; proteogenomics; proteomics; systems biology; COMPREHENSIVE MOLECULAR CHARACTERIZATION; PROTEOGENOMIC CHARACTERIZATION; LUNG-CANCER; BREAST; IDENTIFICATION; PROTEOMICS; TRANSCRIPTOMICS; MECHANISMS; MUTATIONS; REVEALS;
D O I
10.14348/molcells.2021.0042
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Multi-omics approaches are novel frameworks that integrate multiple omics datasets generated from the same patients to better understand the molecular and clinical features of cancers. A wide range of emerging omics and multi view clustering algorithms now provide unprecedented opportunities to further classify cancers into subtypes, improve the survival prediction and therapeutic outcome of these subtypes, and understand key pathophysiological processes through different molecular layers. In this review, we overview the concept and rationale of multi-omics approaches in cancer research. We also introduce recent advances in the development of multi-omics algorithms and integration methods for multiple-layered datasets from cancer patients. Finally, we summarize the latest findings from large-scale multi-omics studies of various cancers and their implications for patient subtyping and drug development.
引用
收藏
页码:433 / 443
页数:11
相关论文
共 50 条
  • [1] Characterization of cancer subtypes associated with clinical outcomes by multi-omics integrative clustering
    Crippa, Valentina
    Malighetti, Federica
    Villa, Matteo
    Graudenzi, Alex
    Piazza, Rocco
    Mologni, Luca
    Ramazzotti, Daniele
    COMPUTERS IN BIOLOGY AND MEDICINE, 2023, 162
  • [2] Editorial: Integrative Approaches to Analyze Cancer Based on Multi-Omics
    Shen, Sipeng
    FRONTIERS IN GENETICS, 2022, 13
  • [3] Integrative Multi-Omics in Biomedical Research
    Hill, Michelle M.
    Gerner, Christopher
    BIOMOLECULES, 2021, 11 (10)
  • [4] Multi-Omics Approaches in Immunological Research
    Chu, Xiaojing
    Zhang, Bowen
    Koeken, Valerie A. C. M.
    Gupta, Manoj Kumar
    Li, Yang
    FRONTIERS IN IMMUNOLOGY, 2021, 12
  • [5] Recent Advances in Integrative Multi-Omics Research in Breast and Ovarian Cancer
    Khella, Christen A.
    Mehta, Gaurav A.
    Mehta, Rushabh N.
    Gatza, Michael L.
    JOURNAL OF PERSONALIZED MEDICINE, 2021, 11 (02): : 1 - 30
  • [6] Multi-Omics Mining of lncRNAs with Biological and Clinical Relevance in Cancer
    Salido-Guadarrama, Ivan
    Romero-Cordoba, Sandra L.
    Rueda-Zarazua, Bertha
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2023, 24 (23)
  • [7] Multi-OMICS: a critical technical perspective on integrative lipidomics approaches
    Kopczynski, Dominik
    Coman, Cristina
    Zahedi, Rene P.
    Lorenz, Kristina
    Sickmann, Albert
    Ahrends, Robert
    BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS, 2017, 1862 (08): : 808 - 811
  • [8] Multi-Omics Integrative Analysis Uncovers Molecular Subtypes and mRNAs as Therapeutic Targets for Liver Cancer
    Shen, Yi
    Xiong, Wei
    Gu, Qi
    Zhang, Qin
    Yue, Jia
    Liu, Changsong
    Wang, Duan
    FRONTIERS IN MEDICINE, 2021, 8
  • [9] Advances in applying of multi-omics approaches in the research of systemic lupus erythematosus Summarization of biomarkers from different omics, and discussion of challenges and advances in integrative analysis of multi-omics in SLE studies
    Song, Wencong
    Tang, Donge
    Chen, Deheng
    Zheng, Fengping
    Huang, Shaoying
    Xu, Yong
    Yu, Haiyan
    He, Jingquan
    Hong, Xiaoping
    Yin, Lianghong
    Liu, Dongzhou
    Dai, Weier
    Dai, Yong
    INTERNATIONAL REVIEWS OF IMMUNOLOGY, 2020, 39 (04) : 163 - 173
  • [10] Multi-omics approaches to human biological age estimation
    Solovev, Ilya
    Shaposhnikov, Mikhail
    Moskalev, Alexey
    MECHANISMS OF AGEING AND DEVELOPMENT, 2020, 185