Blocks of limited haplotype diversity revealed by high-resolution scanning of human chromosome 21

被引:782
|
作者
Patil, N [1 ]
Berno, AJ [1 ]
Hinds, DA [1 ]
Barrett, WA [1 ]
Doshi, JM [1 ]
Hacker, CR [1 ]
Kautzer, CR [1 ]
Lee, DH [1 ]
Marjoribanks, C [1 ]
McDonough, DP [1 ]
Nguyen, BTN [1 ]
Norris, MC [1 ]
Sheehan, JB [1 ]
Shen, NP [1 ]
Stern, D [1 ]
Stokowski, RP [1 ]
Thomas, DJ [1 ]
Trulson, MO [1 ]
Vyas, KR [1 ]
Frazer, KA [1 ]
Fodor, SPA [1 ]
Cox, DR [1 ]
机构
[1] Perlegen Sci Inc, Mountain View, CA 94043 USA
关键词
D O I
10.1126/science.1065573
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Global patterns of human DNA sequence variation (haplotypes) defined by common single nucleotide polymorphisms (SNPs) have important implications for identifying disease associations and human traits. We have used high-density oligonucleotide arrays, in combination with somatic cell genetics, to identify a large fraction of all common human chromosome 21 SNPs and to directly observe the haplotype structure defined by these SNPs. This structure reveals blocks of limited haplotype diversity in which more than 80% of a global human sample can typically be characterized by only three common haplotypes.
引用
收藏
页码:1719 / 1723
页数:5
相关论文
共 50 条
  • [1] Haplotype block partition with limited resources and applications to human chromosome 21 haplotype data
    Zhang, K
    Sun, FZ
    Waterman, MS
    Chen, T
    [J]. AMERICAN JOURNAL OF HUMAN GENETICS, 2003, 73 (01) : 63 - 73
  • [2] High-resolution physical map of 3 regions of human chromosome 21
    Solans, A
    Domenech, A
    Casas, C
    Puig, A
    Pucharcos, C
    Guimera, J
    Estivill, X
    Pritchard, M
    [J]. CYTOGENETICS AND CELL GENETICS, 1997, 77 : 16 - 16
  • [3] High-resolution haplotype structure in the human genome
    Mark J. Daly
    John D. Rioux
    Stephen F. Schaffner
    Thomas J. Hudson
    Eric S. Lander
    [J]. Nature Genetics, 2001, 29 : 229 - 232
  • [4] High-resolution haplotype structure in the human genome
    Daly, MJ
    Rioux, JD
    Schaffner, SE
    Hudson, TJ
    Lander, ES
    [J]. NATURE GENETICS, 2001, 29 (02) : 229 - 232
  • [5] High-resolution replication study of chromosome 21
    Vannier, A
    Mircher, C
    Theophile, D
    Vekemans, M
    [J]. CYTOGENETICS AND CELL GENETICS, 1997, 77 : 2 - 3
  • [6] Complex high-resolution linkage disequilibrium and haplotype patterns of single-nucleotide polymorphisms in 2.5 Mb of sequence on human chromosome 21
    Olivier, M
    Bustos, VI
    Levy, MR
    Smick, GA
    Moreno, I
    Bushard, JM
    Almendras, AA
    Sheppard, K
    Zierten, DL
    Aggarwal, A
    Carlson, CS
    Foster, BD
    Vo, N
    Kelly, L
    Liu, X
    Cox, DR
    [J]. GENOMICS, 2001, 78 (1-2) : 64 - 72
  • [7] HIGH-RESOLUTION IMAGING OF HUMAN CHROMOSOME-STRUCTURES BY SCANNING ION ANALYTICAL MICROSCOPY
    BOURGEOIS, CA
    DENNEBOUY, R
    MALFOY, B
    SLODZIAN, G
    DUTRILLAUX, B
    [J]. AMERICAN JOURNAL OF HUMAN GENETICS, 1993, 53 (03) : 529 - 529
  • [8] High-resolution comparative physical mapping of mouse Chromosome 10 in the region of homology with human Chromosome 21
    Cole, SE
    Wiltshire, T
    Rue, EE
    Morrow, D
    Hieter, P
    Brahe, C
    Fisher, EM
    Katsanis, N
    Reeves, RH
    [J]. MAMMALIAN GENOME, 1999, 10 (03) : 229 - 234
  • [9] High-resolution comparative physical mapping of mouse Chromosome 10 in the region of homology with human Chromosome 21
    Susan E. Cole
    Tim Wiltshire
    Elizabeth E. Rue
    Dwight Morrow
    Phil Hieter
    Christina Brahe
    Elizabeth M. Fisher
    Nicholas Katsanis
    Roger H. Reeves
    [J]. Mammalian Genome, 1999, 10 : 229 - 234
  • [10] A high-resolution map of human chromosome 12
    Montgomery, KT
    Lee, E
    Miller, A
    Lau, S
    Shim, C
    Decker, J
    Chiu, D
    Emerling, S
    Sekhon, M
    Kim, R
    Lenz, J
    Han, JH
    Ioshikhes, I
    Renault, B
    Marondel, I
    Yoon, SJK
    Song, K
    Murty, VVVS
    Scherer, S
    Yonescu, R
    Kirsch, IR
    Ried, T
    McPherson, J
    Gibbs, R
    Kucherlapati, R
    [J]. NATURE, 2001, 409 (6822) : 945 - 946