On the Algorithmic Identification of Optimal Coarse-Grained Representations of Biomolecules

被引:0
|
作者
Potestio, Raffaello [1 ]
机构
[1] Univ Trento, Dept Phys, Trento, Italy
关键词
D O I
暂无
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
1723-Wkshp
引用
收藏
页码:352A / 352A
页数:1
相关论文
共 50 条
  • [1] Constructing Optimal Coarse-Grained Sites of Huge Biomolecules by Fluctuation Maximization
    Li, Min
    Zhang, John Zenghui
    Xia, Fei
    [J]. JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2016, 12 (04) : 2091 - 2100
  • [2] Optimal Coarse-Grained Site Selection in Elastic Network Models of Biomolecules
    Diggins, Patrick
    Liu, Changjiang
    Deserno, Markus
    Potestio, Raffaello
    [J]. JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2019, 15 (01) : 648 - 664
  • [3] Coarse-grained molecular simulations of large biomolecules
    Takada, Shoji
    [J]. CURRENT OPINION IN STRUCTURAL BIOLOGY, 2012, 22 (02) : 130 - 137
  • [4] Coarse-grained molecular dynamics simulations of biomolecules
    Takahashi, Ken
    Oda, Takayuki
    Naruse, Keiji
    [J]. AIMS BIOPHYSICS, 2014, 1 (01): : 1 - 15
  • [5] Recent Advances in Coarse-Grained Models for Biomolecules and Their Applications
    Singh, Nidhi
    Li, Wenjin
    [J]. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2019, 20 (15)
  • [6] Determining Optimal Coarse-Grained Representation for Biomolecules Using Internal Cluster Validation Indexes
    Wu, Zhenliang
    Zhang, Yuwei
    Zhang, John Zenghui
    Xia, Kelin
    Xia, Fei
    [J]. JOURNAL OF COMPUTATIONAL CHEMISTRY, 2020, 41 (01) : 14 - 20
  • [7] Defining Coarse-Grained Representations of Large Biomolecules and Biomolecular Complexes from Elastic Network Models
    Zhang, Zhiyong
    Pfaendtner, Jim
    Grafmueller, Andrea
    Voth, Gregory A.
    [J]. BIOPHYSICAL JOURNAL, 2009, 97 (08) : 2327 - 2337
  • [8] Highly Coarse-Grained Representations of Transmembrane Proteins
    Madsen, Jesper J.
    Sinitskiy, Anton V.
    Li, Jianing
    Voth, Gregory A.
    [J]. JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2017, 13 (02) : 935 - 944
  • [9] Identifying Coarse-Grained Representations for Electronic Predictions
    Wang, Chun-, I
    Maier, J. Charlie
    Jackson, Nicholas E.
    [J]. JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2023, 19 (15) : 4982 - 4990
  • [10] A Systematic Methodology for Defining Coarse-Grained Sites in Large Biomolecules
    Zhang, Zhiyong
    Lu, Lanyuan
    Noid, Will G.
    Krishna, Vinod
    Pfaendtner, Jim
    Voth, Gregory A.
    [J]. BIOPHYSICAL JOURNAL, 2008, 95 (11) : 5073 - 5083