The Role of Cations of the Precipitant in the Interaction of Protein Molecules in the Lysozyme Oligomers in Crystallization Solutions

被引:4
|
作者
Kordonskaya, Yuliya V. [1 ]
Timofeev, Vladimir I. [2 ]
Dyakova, Yulia A. [1 ]
Marchenkova, Margarita A. [2 ]
Pisarevsky, Yury V. [2 ]
Kovalchuk, Mikhail V. [1 ]
机构
[1] Natl Res Ctr Kurchatov Inst, 1,Akad Kurchatova Pl, Moscow 123182, Russia
[2] Russian Acad Sci, AV Shubnikov Inst Crystallog, Fed Sci Res Ctr Crystallog & Photon, 59 Leninskii Prospect, Moscow 119333, Russia
基金
俄罗斯基础研究基金会;
关键词
protein crystallography; molecular modeling; molecular dynamics; precipitant ions; X-RAY-SCATTERING; STAGE; DYNAMICS;
D O I
10.3390/cryst11121534
中图分类号
O7 [晶体学];
学科分类号
0702 ; 070205 ; 0703 ; 080501 ;
摘要
At the moment, the main opinion is that protein crystallization depends mainly on the the precipitant anions, therefore, there have been only few works devoted to the problem of the influence of its cations. Using the molecular dynamics method, we investigated the stability, changes in the compactness and structural transformations of lysozyme dimers and octamers in solutions with different precipitants (LiCl, NaCl, KCl and CuCl2) in order to study the contribution of cations during crystal formation in more detail. As a result, we found that cations have a rather noticeable effect on the behavior of oligomers: the higher the atomic mass of the cation, the greater the changes in the dimers structures during its dynamics and, according to the data of SAXS experiments, the lower the concentration of dimers. However, for octamers, this dependence is more complicated.
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页数:13
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