Decentralized Distributed Multi-institutional PET Image Segmentation Using a Federated Deep Learning Framework

被引:22
|
作者
Shiri, Isaac [1 ]
Sadr, Alireza Vafaei [2 ,3 ,4 ]
Amini, Mehdi [1 ]
Salimi, Yazdan [1 ]
Sanaat, Amirhossein [1 ]
Akhavanallaf, Azadeh [1 ]
Razeghi, Behrooz [5 ]
Ferdowsi, Sohrab [6 ]
Saberi, Abdollah [1 ]
Arabi, Hossein [1 ]
Becker, Minerva [7 ]
Voloshynovskiy, Slava [5 ]
Gunduz, Deniz [8 ]
Rahmim, Arman [9 ,10 ]
Zaidi, Habib [1 ,11 ,12 ,13 ]
机构
[1] Geneva Univ Hosp, Div Nucl Med & Mol Imaging, Rue Gabrielle Perret Gentil 4, CH-1211 Geneva, Switzerland
[2] Univ Geneva, Dept Theoret Phys, Geneva, Switzerland
[3] Univ Geneva, Ctr Astroparticle Phys, Geneva, Switzerland
[4] RWTH Aachen Univ Hosp, Inst Pathol, Aachen, Germany
[5] Univ Geneva, Dept Comp Sci, Geneva, Switzerland
[6] Univ Geneva, IIHES So, Geneva, Switzerland
[7] Geneva Univ Hosp, Div Radiol, Geneva, Switzerland
[8] Imperial Coll London, Fac Engn, Dept Elect & Elect Engn, London, England
[9] Univ British Columbia, Dept Radiol & Phys, Vancouver, BC, Canada
[10] BC Canc Res Inst, Dept Integrat Oncol, Vancouver, BC, Canada
[11] Univ Geneva, Geneva Univ Neuroctr, Geneva, Switzerland
[12] Univ Groningen, Univ Med Ctr Groningen, Dept Nucl Med & Mol Imaging, Groningen, Netherlands
[13] Univ Southern Denmark, Dept Nucl Med, Odense, Denmark
基金
瑞士国家科学基金会;
关键词
distributed deep learning; federated learning; multicenter studies; PET; segmentation; TARGET VOLUME DELINEATION; GROSS TUMOR VOLUME; THRESHOLD SEGMENTATION; CLASSIFICATION; PRIVACY; HEAD;
D O I
10.1097/RLU.0000000000004194
中图分类号
R8 [特种医学]; R445 [影像诊断学];
学科分类号
1002 ; 100207 ; 1009 ;
摘要
Purpose The generalizability and trustworthiness of deep learning (DL)-based algorithms depend on the size and heterogeneity of training datasets. However, because of patient privacy concerns and ethical and legal issues, sharing medical images between different centers is restricted. Our objective is to build a federated DL-based framework for PET image segmentation utilizing a multicentric dataset and to compare its performance with the centralized DL approach. Methods PET images from 405 head and neck cancer patients from 9 different centers formed the basis of this study. All tumors were segmented manually. PET images converted to SUV maps were resampled to isotropic voxels (3 x 3 x 3 mm(3)) and then normalized. PET image subvolumes (12 x 12 x 12 cm(3)) consisting of whole tumors and background were analyzed. Data from each center were divided into train/validation (80% of patients) and test sets (20% of patients). The modified R2U-Net was used as core DL model. A parallel federated DL model was developed and compared with the centralized approach where the data sets are pooled to one server. Segmentation metrics, including Dice similarity and Jaccard coefficients, percent relative errors (RE%) of SUVpeak, SUVmean, SUVmedian, SUVmax, metabolic tumor volume, and total lesion glycolysis were computed and compared with manual delineations. Results The performance of the centralized versus federated DL methods was nearly identical for segmentation metrics: Dice (0.84 +/- 0.06 vs 0.84 +/- 0.05) and Jaccard (0.73 +/- 0.08 vs 0.73 +/- 0.07). For quantitative PET parameters, we obtained comparable RE% for SUVmean (6.43% +/- 4.72% vs 6.61% +/- 5.42%), metabolic tumor volume (12.2% +/- 16.2% vs 12.1% +/- 15.89%), and total lesion glycolysis (6.93% +/- 9.6% vs 7.07% +/- 9.85%) and negligible RE% for SUVmax and SUVpeak. No significant differences in performance (P > 0.05) between the 2 frameworks (centralized vs federated) were observed. Conclusion The developed federated DL model achieved comparable quantitative performance with respect to the centralized DL model. Federated DL models could provide robust and generalizable segmentation, while addressing patient privacy and legal and ethical issues in clinical data sharing.
引用
收藏
页码:606 / 617
页数:12
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