Flows, scaling, and the control of moment hierarchies for stochastic chemical reaction networks

被引:8
|
作者
Smith, Eric [1 ,2 ,3 ,4 ]
Krishnamurthy, Supriya [5 ]
机构
[1] Tokyo Inst Technol, Earth Life Sci Inst, Meguro Ku, 2-12-1-IE-1 Ookayama, Tokyo 1528550, Japan
[2] Georgia Inst Technol, Dept Biol, 310 Ferst Dr NW, Atlanta, GA 30332 USA
[3] Santa Fe Inst, 1399 Hyde Pk Rd, Santa Fe, NM 87501 USA
[4] Ronin Inst, 127 Haddon Pl, Montclair, NJ 07043 USA
[5] Stockholm Univ, Dept Phys, S-10691 Stockholm, Sweden
关键词
STATIONARY DISTRIBUTIONS; DEFICIENCY-ZERO;
D O I
10.1103/PhysRevE.96.062102
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
Stochastic chemical reaction networks (CRNs) are complex systems that combine the features of concurrent transformation of multiple variables in each elementary reaction event and nonlinear relations between states and their rates of change. Most general results concerning CRNs are limited to restricted cases where a topological characteristic known as deficiency takes a value 0 or 1, implying uniqueness and positivity of steady states and surprising, low-information forms for their associated probability distributions. Here we derive equations of motion for fluctuation moments at all orders for stochastic CRNs at general deficiency. We show, for the standard base case of proportional sampling without replacement (which underlies the mass-action rate law), that the generator of the stochastic process acts on the hierarchy of factorial moments with a finite representation. Whereas simulation of high-order moments for many-particle systems is costly, this representation reduces the solution of moment hierarchies to a complexity comparable to solving a heat equation. At steady states, moment hierarchies for finite CRNs interpolate between low-order and high-order scaling regimes, which may be approximated separately by distributions similar to those for deficiency-zero networks and connected through matched asymptotic expansions. In CRNs with multiple stable or metastable steady states, boundedness of high-order moments provides the starting condition for recursive solution downward to low-order moments, reversing the order usually used to solve moment hierarchies. A basis for a subset of network flows defined by having the same mean-regressing property as the flows in deficiency-zero networks gives the leading contribution to low-order moments in CRNs at general deficiency, in a 1/n expansion in large particle numbers. Our results give a physical picture of the different informational roles of mean-regressing and non-mean-regressing flows and clarify the dynamical meaning of deficiency not only for first-moment conditions but for all orders in fluctuations.
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页数:29
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