Artificial Intelligence for COVID-19 Drug Discovery and Vaccine Development

被引:106
|
作者
Arshadi, Arash Keshavarzi [1 ]
Webb, Julia [1 ]
Salem, Milad [2 ]
Cruz, Emmanuel [3 ]
Calad-Thomson, Stacie [4 ]
Ghadirian, Niloofar [5 ]
Collins, Jennifer [1 ]
Diez-Cecilia, Elena [3 ]
Kelly, Brendan [3 ]
Goodarzi, Hani [6 ]
Yuan, Jiann Shiun [2 ]
机构
[1] Univ Cent Florida, Burnett Sch Biomed Sci, Orlando, FL 32816 USA
[2] Univ Cent Florida, Dept Elect & Comp Engn, Orlando, FL 32816 USA
[3] A2A Pharmaceut, Cambridge, MA USA
[4] Atomwise Inc, San Francisco, CA USA
[5] Univ Arizona, Dept Chem & Biochem, Tucson, AZ USA
[6] Univ Calif San Francisco, Dept Biochem & Biophys, Helen Diller Family Comprehens Canc Ctr, San Francisco, CA USA
来源
关键词
COVID-19; SARS-COV-2; drug; vaccine; artificial intelligence; deep learning; REVERSE VACCINOLOGY; SARS-CORONAVIRUS; RNA PSEUDOKNOT; DESIGN; PROTEIN; SARS-COV-2; PREDICTION; INHIBITORS; CLASSIFICATION; IDENTIFICATION;
D O I
10.3389/frai.2020.00065
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
SARS-COV-2 has roused the scientific community with a call to action to combat the growing pandemic. At the time of this writing, there are as yet no novel antiviral agents or approved vaccines available for deployment as a frontline defense. Understanding the pathobiology of COVID-19 could aid scientists in their discovery of potent antivirals by elucidating unexplored viral pathways. One method for accomplishing this is the leveraging of computational methods to discover new candidate drugs and vaccines in silico. In the last decade, machine learning-based models, trained on specific biomolecules, have offered inexpensive and rapid implementation methods for the discovery of effective viral therapies. Given a target biomolecule, these models are capable of predicting inhibitor candidates in a structural-based manner. If enough data are presented to a model, it can aid the search for a drug or vaccine candidate by identifying patterns within the data. In this review, we focus on the recent advances of COVID-19 drug and vaccine development using artificial intelligence and the potential of intelligent training for the discovery of COVID-19 therapeutics. To facilitate applications of deep learning for SARS-COV-2, we highlight multiple molecular targets of COVID-19, inhibition of which may increase patient survival. Moreover, we present CoronaDB-AI, a dataset of compounds, peptides, and epitopes discovered either in silico or in vitro that can be potentially used for training models in order to extract COVID-19 treatment. The information and datasets provided in this review can be used to train deep learning-based models and accelerate the discovery of effective viral therapies.
引用
收藏
页数:13
相关论文
共 50 条
  • [1] Covid-19 and Artificial Intelligence: Genome sequencing, drug development and vaccine discovery
    Bagabir, Sali Abubaker
    Ibrahim, Nahla Khamis
    Bagabir, Hala Abubaker
    Ateeq, Raghdah Hashem
    [J]. JOURNAL OF INFECTION AND PUBLIC HEALTH, 2022, 15 (02) : 289 - 296
  • [2] Artificial Intelligence in Surveillance, Diagnosis, Drug Discovery and Vaccine Development against COVID-19
    Arora, Gunjan
    Joshi, Jayadev
    Mandal, Rahul Shubhra
    Shrivastava, Nitisha
    Virmani, Richa
    Sethi, Tavpritesh
    [J]. PATHOGENS, 2021, 10 (08):
  • [3] Application of artificial intelligence and machine learning for COVID-19 drug discovery and vaccine design
    Lv, Hao
    Shi, Lei
    Berkenpas, Joshua William
    Dao, Fu-Ying
    Zulfiqar, Hasan
    Ding, Hui
    Zhang, Yang
    Yang, Liming
    Cao, Renzhi
    [J]. BRIEFINGS IN BIOINFORMATICS, 2021, 22 (06)
  • [4] The role of artificial intelligence in the development of COVID-19 vaccine
    Mohammad, Sattari
    Maryam, Mohammadi
    [J]. INTERNATIONAL JOURNAL OF PREVENTIVE MEDICINE, 2023, 14 (01)
  • [5] Addressing COVID-19 Drug Development with Artificial Intelligence
    Ho, Dean
    [J]. ADVANCED INTELLIGENT SYSTEMS, 2020, 2 (05)
  • [6] Potential of artificial intelligence to accelerate diagnosis and drug discovery for COVID-19
    Mikkili, Indira
    Karlapudi, Abraham Peele
    Venkateswarulu, T. C.
    Kodali, Vidya Prabhakar
    Macamdas, Deepika Sri Singh
    Sreerama, Krupanidhi
    [J]. PEERJ, 2021, 9
  • [7] Artificial intelligence in COVID-19 drug repurposing
    Zhou, Yadi
    Wang, Fei
    Tang, Jian
    Nussinov, Ruth
    Cheng, Feixiong
    [J]. LANCET DIGITAL HEALTH, 2020, 2 (12): : E667 - E676
  • [8] Application of Artificial Intelligence in COVID-19 drug repurposing
    Mohanty, Sweta
    Rashid, Md Harun A., I
    Mridul, Mayank
    Mohanty, Chandana
    Swayamsiddha, Swati
    [J]. DIABETES & METABOLIC SYNDROME-CLINICAL RESEARCH & REVIEWS, 2020, 14 (05) : 1027 - 1031
  • [9] COVID-19: Discovery, diagnostics and drug development
    Asselah, Tarik
    Durantel, David
    Pasmant, Eric
    Lau, George
    Schinazi, Raymond F.
    [J]. JOURNAL OF HEPATOLOGY, 2021, 74 (01) : 168 - 184
  • [10] Recent insights for the emerging COVID-19: Drug discovery, therapeutic options and vaccine development
    Zhu, Yuefei
    Li, Jia
    Pang, Zhiqing
    [J]. ASIAN JOURNAL OF PHARMACEUTICAL SCIENCES, 2021, 16 (01) : 4 - 23