Computational methods for prediction of drug properties - application to Cytochrome P450 metabolism prediction

被引:1
|
作者
Patrascu, Mihai Burai [1 ]
Plescia, Jessica [1 ]
Kalgutkar, Amit [2 ]
Mascitti, Vincent [2 ]
Moitessier, Nicolas [1 ]
机构
[1] McGill Univ, Dept Chem, 801 Sherbrooke St West, Montreal, PQ H3A 0B8, Canada
[2] Pfizer Inc, Med Design, 610 Main St, Cambridge, MA 02139 USA
基金
加拿大自然科学与工程研究理事会;
关键词
Sites of metabolism; machine learning; quantum mechanics; structure-based drug design; ligand-based drug design; SEMIEMPIRICAL METHODS; RS-PREDICTOR; SITES; DOCKING; REGIOSELECTIVITY; SMARTCYP; MODELS; OPTIMIZATION; VALIDATION; PARAMETERS;
D O I
10.24820/ark.5550190.p010.970
中图分类号
O62 [有机化学];
学科分类号
070303 ; 081704 ;
摘要
Computational methods are becoming essential in the drug discovery world. Structure-based methods (i.e. docking), ligand-based methods, and machine learning are common practice. In this review, we present the major methods and their application to the prediction of cytochrome P450 (CYP)-mediated drug metabolism. More specifically, this mini-review is focused on the different methods used in predicting sites of metabolism (SoMs), and presents the advantages and disadvantages of various SoM prediction tools that are currently in use in both academia and industry. [GRAPHICS] .
引用
收藏
页码:280 / 298
页数:19
相关论文
共 50 条
  • [1] Metabolism prediction for cytochrome P450
    Zamora, I
    Ridderström, M
    Vianello, R
    Cruciani, G
    Anderson, TB
    DRUG METABOLISM REVIEWS, 2003, 35 : 39 - 39
  • [2] Fast Prediction of Cytochrome P450 Mediated Drug Metabolism
    Rydberg, Patrik
    Vasanthanathan, Poongavanam
    Oostenbrink, Chris
    Olsen, Lars
    CHEMMEDCHEM, 2009, 4 (12) : 2070 - 2079
  • [3] Prediction of cytochrome P450 mediated metabolism
    Olsen, Lars
    Oostenbrink, Chris
    Jorgensen, Flemming Steen
    ADVANCED DRUG DELIVERY REVIEWS, 2015, 86 : 61 - 71
  • [4] Computational prediction of cytochrome P450 inhibition and induction
    Kato, Harutoshi
    DRUG METABOLISM AND PHARMACOKINETICS, 2020, 35 (01) : 30 - 44
  • [5] Computational methods and tools to predict cytochrome P450 metabolism for drug discovery
    Tyzack, Jonathan D.
    Kirchmair, Johannes
    CHEMICAL BIOLOGY & DRUG DESIGN, 2019, 93 (04) : 377 - 386
  • [6] In silico Prediction of Drug Metabolism by P450
    Andrade, Carolina H.
    Silva, Diego C.
    Braga, Rodolpho C.
    CURRENT DRUG METABOLISM, 2014, 15 (05) : 514 - 525
  • [7] The SMARTCyp cytochrome P450 metabolism prediction server
    Rydberg, Patrik
    Gloriam, David E.
    Olsen, Lars
    BIOINFORMATICS, 2010, 26 (23) : 2988 - 2989
  • [8] Prediction of Cytochrome P450 Mediated Metabolism of Designer Drugs
    Nielsen, Line Marie
    Linnet, Kristian
    Olsen, Lars
    Rydberg, Patrik
    CURRENT TOPICS IN MEDICINAL CHEMISTRY, 2014, 14 (11) : 1365 - 1373
  • [9] Prediction of drug metabolism: The case of cytochrome P450 2D6
    Vermeulen, NPE
    CURRENT TOPICS IN MEDICINAL CHEMISTRY, 2003, 3 (11) : 1227 - 1239
  • [10] CYTOCHROME P450 TURNOVER: METHODS FOR DETERMINING RATES AND IMPLICATIONS FOR THE PREDICTION OF DRUG INTERACTIONS
    Yang, Jiansong
    Liao, Mingxiang
    Shou, Magang
    Jamei, Masoud
    Yeo, Karen R.
    Tucker, Geoffrey T.
    Rostami-Hodjegan, Amin
    DRUG METABOLISM REVIEWS, 2008, 40 : 59 - 59