Whole-Exome Sequencing in a Cohort of High Myopia Patients in Northwest China

被引:8
|
作者
Liu, Yang [1 ]
Zhang, Jin-Jin [2 ]
Piao, Shun-Yu [3 ]
Shen, Ren-Juan [4 ]
Ma, Ya [4 ]
Xue, Zhong-Qi [5 ]
Zhang, Wen [3 ]
Liu, Juan [1 ]
Jin, Zi-Bing [4 ]
Zhuang, Wen-Juan [3 ]
机构
[1] Ningxia Med Univ, Sch Basic Med Sci, Clin Med Coll 3, Peoples Hosp Ningxia Hui Autonomous Reg, Yinchuan, Ningxia, Peoples R China
[2] Ningxia Med Univ, Clin Med Coll, Yinchuan, Ningxia, Peoples R China
[3] Ningxia Med Univ, Ningxia Eye Hosp, Peoples Hosp Ningxia Hui Autonomous Reg, Clin Med Coll 3, Yinchuan, Ningxia, Peoples R China
[4] Capital Med Univ, Beijing Ophthalmol & Visual Sci Key Lab, Beijing Inst Ophthalmol, Beijing Tongren Eye Ctr,Beijing Tongren Hosp, Beijing, Peoples R China
[5] Qingdao Binhai Univ, Dept Ophthalmol, Affiliated Hosp, Qingdao, Peoples R China
基金
中国国家自然科学基金; 北京市自然科学基金;
关键词
high myopia; cohort; mutation; gene; Northwest China; GENOTYPE-PHENOTYPE CORRELATION; INHERITED RETINAL DYSTROPHY; MUTATION SPECTRUM; ASSOCIATION; PREVALENCE; VARIANTS; SCO2; FAMILIES; GENETICS; LEPREL1;
D O I
10.3389/fcell.2021.645501
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
High myopia (HM) is one of the leading causes of visual impairment worldwide. In order to expand the myopia gene spectrum in the Chinese population, we investigated genetic mutations in a cohort of 27 families with HM from Northwest China by using whole-exome sequencing (WES). Genetic variations were filtered using bioinformatics tools and cosegregation analysis. A total of 201 candidate mutations were detected, and 139 were cosegregated with the disease in the families. Multistep analysis revealed four missense variants in four unrelated families, including c.904C>T (p.R302C) in CSMD1, c.860G>A (p.R287H) in PARP8, c.G848A (p.G283D) in ADAMTSL1, and c.686A>G (p.H229R) in FNDC3B. These mutations were rare or absent in the Exome Aggregation Consortium (ExAC), 1000 Genomes Project, and Genome Aggregation Database (gnomAD), indicating that they are new candidate disease-causing genes. Our findings not only expand the myopia gene spectrum but also provide reference information for further genetic study of heritable HM.
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页数:12
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