Model of peptide bond-aromatic ring interaction:: Correlated ab initio quantum chemical study

被引:33
|
作者
Bendova, Lada
Jurecka, Petr
Hobza, Pavel
Vondrasek, Jiri
机构
[1] Acad Sci Czech Republic, Inst Organ Chem & Biochem, CR-16610 Prague 6, Czech Republic
[2] Ctr Biomol & Complex Mol Syst, Prague 16610 6, Czech Republic
[3] Palacky Univ, Dept Phys Chem, Olomouc 77146, Czech Republic
[4] Palacky Univ, Ctr Biomol & Complex Mol Syst, Olomouc 77146, Czech Republic
来源
JOURNAL OF PHYSICAL CHEMISTRY B | 2007年 / 111卷 / 33期
关键词
D O I
10.1021/jp072859+
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Aromatic ring-peptide bond interactions (modeled as benzene and formamide, N-methylformamide and N-methylacetamide) are studied by means of advanced computational chemistry methods: second-order Moller-Plesset (MP2), coupled-cluster single and double excitation model [CCSD(T)], and density functional theory with dispersion (DFT-D). The geometrical preferences of these interactions as well as their interaction energy content, in both parallel and T-shaped arrangements, are investigated. The stabilization energy reaches a value of over 5 kcal/mol for the N-methylformamide-benzene complex at the CCSD(T)/complete basis set (CBS) level. Decomposition of interaction energy by the DFT-symmetry-adapted perturbation treatment (SAPT) technique shows that the parallel and T-shaped arrangements, although similar in their total interaction energies, differ significantly in the proportion of electrostatic and dispersion terms.
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页码:9975 / 9979
页数:5
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