Proteome profile of zebrafish caudal fin based on one-dimensional gel electrophoresis LCMS/MS and two-dimensional gel electrophoresis MALDI MS/MS analysis
Zebrafish (Danio rerio) is the widely used vertebrate model animal for understanding the complexity of development and disease process. Zebrafish has been also extensively used in understanding the mechanism of regeneration for its extensive capability of regenerating fins and other tissues. We have analyzed the proteome profile of zebrafish caudal fin in its native state based on one-dimensional gel electrophoresis LCMS/MS and two-dimensional gel electrophoresis MS/MS analyses. A total of 417 proteins were identified as zebrafish fin tissue specific, which includes 397 proteins identified based on one-dimensional gel electrophoresis LCMS/MS analysis and 101 proteins identified based on two-dimensional gel electrophoresis MALDI MS/MS. The proteins mapped to the zebrafish fin tissue were shown to be involved in various biological activities related to development, apoptosis, signaling and metabolic process. Focal adhesion, regulation of actin cytoskeleton, cancer-related pathways, mitogen-activated protein kinase signaling, antigen processing and presentation, and proteasome are some of the important pathways associated with the identified proteome data set of the zebrafish fin.
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Arizona State Univ, Coll Liberal Arts & Sci, Ctr Metabol Biol, Tempe, AZ 85287 USA
Odense Univ Hosp, Dept Endocrinol, Diabet Res Ctr, DK-5000 Odense, DenmarkArizona State Univ, Coll Liberal Arts & Sci, Ctr Metabol Biol, Tempe, AZ 85287 USA
Hojlund, Kurt
Yi, Zhengping
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Arizona State Univ, Coll Liberal Arts & Sci, Ctr Metabol Biol, Tempe, AZ 85287 USA
Arizona State Univ, Sch Life Sci, Tempe, AZ USAArizona State Univ, Coll Liberal Arts & Sci, Ctr Metabol Biol, Tempe, AZ 85287 USA
Yi, Zhengping
Hwang, Hyonson
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Arizona State Univ, Coll Liberal Arts & Sci, Ctr Metabol Biol, Tempe, AZ 85287 USA
Arizona State Univ, Dept Kinesiol, Tempe, AZ USAArizona State Univ, Coll Liberal Arts & Sci, Ctr Metabol Biol, Tempe, AZ 85287 USA
Hwang, Hyonson
Bowen, Benjamin
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Arizona State Univ, Coll Liberal Arts & Sci, Ctr Metabol Biol, Tempe, AZ 85287 USA
Arizona State Univ, Harrington Dept Bioengn, Tempe, AZ USAArizona State Univ, Coll Liberal Arts & Sci, Ctr Metabol Biol, Tempe, AZ 85287 USA
Bowen, Benjamin
Lefort, Natalie
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Arizona State Univ, Coll Liberal Arts & Sci, Ctr Metabol Biol, Tempe, AZ 85287 USA
Arizona State Univ, Dept Kinesiol, Tempe, AZ USAArizona State Univ, Coll Liberal Arts & Sci, Ctr Metabol Biol, Tempe, AZ 85287 USA
Lefort, Natalie
Flynn, Charles R.
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Arizona State Univ, Coll Liberal Arts & Sci, Ctr Metabol Biol, Tempe, AZ 85287 USAArizona State Univ, Coll Liberal Arts & Sci, Ctr Metabol Biol, Tempe, AZ 85287 USA
Flynn, Charles R.
Langlais, Paul
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Arizona State Univ, Coll Liberal Arts & Sci, Ctr Metabol Biol, Tempe, AZ 85287 USA
Arizona State Univ, Dept Kinesiol, Tempe, AZ USAArizona State Univ, Coll Liberal Arts & Sci, Ctr Metabol Biol, Tempe, AZ 85287 USA
Langlais, Paul
Weintraub, Susan T.
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Univ Texas Hlth Sci Ctr San Antonio, Dept Biochem, San Antonio, TX 78229 USAArizona State Univ, Coll Liberal Arts & Sci, Ctr Metabol Biol, Tempe, AZ 85287 USA
Weintraub, Susan T.
Mandarino, Lawrence J.
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Arizona State Univ, Coll Liberal Arts & Sci, Ctr Metabol Biol, Tempe, AZ 85287 USA
Arizona State Univ, Sch Life Sci, Tempe, AZ USA
Arizona State Univ, Dept Kinesiol, Tempe, AZ USAArizona State Univ, Coll Liberal Arts & Sci, Ctr Metabol Biol, Tempe, AZ 85287 USA
机构:
Arizona State Univ, Dept Kinesiol, Tempe, AZ 85287 USAArizona State Univ, Ctr Metab Biol, Coll Liberal Arts & Sci, Tempe, AZ 85287 USA
Lefort, Natalie
Yi, Zhengping
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h-index: 0
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Arizona State Univ, Sch Life Sci, Tempe, AZ 85287 USAArizona State Univ, Ctr Metab Biol, Coll Liberal Arts & Sci, Tempe, AZ 85287 USA
Yi, Zhengping
Bowen, Benjamin
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Arizona State Univ, Harrington Dept Bioengn, Tempe, AZ 85287 USAArizona State Univ, Ctr Metab Biol, Coll Liberal Arts & Sci, Tempe, AZ 85287 USA
Bowen, Benjamin
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Glancy, Brian
De Filippis, Eleanna A.
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机构:Arizona State Univ, Ctr Metab Biol, Coll Liberal Arts & Sci, Tempe, AZ 85287 USA
De Filippis, Eleanna A.
Mapes, Rebekka
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机构:Arizona State Univ, Ctr Metab Biol, Coll Liberal Arts & Sci, Tempe, AZ 85287 USA
Mapes, Rebekka
Hwang, Hyonson
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Arizona State Univ, Dept Kinesiol, Tempe, AZ 85287 USAArizona State Univ, Ctr Metab Biol, Coll Liberal Arts & Sci, Tempe, AZ 85287 USA
Hwang, Hyonson
Flynn, Charles R.
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机构:Arizona State Univ, Ctr Metab Biol, Coll Liberal Arts & Sci, Tempe, AZ 85287 USA
Flynn, Charles R.
Willis, Wayne T.
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Arizona State Univ, Dept Kinesiol, Tempe, AZ 85287 USAArizona State Univ, Ctr Metab Biol, Coll Liberal Arts & Sci, Tempe, AZ 85287 USA
Willis, Wayne T.
Civitarese, Anthony
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Arizona State Univ, Dept Kinesiol, Tempe, AZ 85287 USAArizona State Univ, Ctr Metab Biol, Coll Liberal Arts & Sci, Tempe, AZ 85287 USA
Civitarese, Anthony
Hojlund, Kurt
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机构:
Odense Univ Hosp, Dept Endocrinol, Ctr Diabet Res, DK-5000 Odense, DenmarkArizona State Univ, Ctr Metab Biol, Coll Liberal Arts & Sci, Tempe, AZ 85287 USA
Hojlund, Kurt
Mandarino, Lawrence J.
论文数: 0引用数: 0
h-index: 0
机构:
Arizona State Univ, Ctr Metab Biol, Coll Liberal Arts & Sci, Tempe, AZ 85287 USA
Arizona State Univ, Sch Life Sci, Tempe, AZ 85287 USA
Arizona State Univ, Dept Kinesiol, Tempe, AZ 85287 USAArizona State Univ, Ctr Metab Biol, Coll Liberal Arts & Sci, Tempe, AZ 85287 USA