Modeling regimes with extremes: the bayesdfa package for identifying and forecasting common trends and anomalies in multivariate time-series data

被引:0
|
作者
Ward, Eric J. [1 ]
Anderson, Sean C. [2 ]
Damiano, Luis A. [3 ]
Hunsicker, Mary E. [4 ]
Litzow, Michael A. [5 ]
机构
[1] NOAA, Conservat Biol Div, Northwest Fisheries Sci Ctr, 2725 Montlake Blvd E, Seattle, WA 98112 USA
[2] Fisheries & Oceans Canada, Pacific Biol Stn, 3190 Hammond Bay Rd, Nanaimo, BC V6T 6N7, Canada
[3] Iowa State Univ, 2438 Osborn Dr,Snedecor Hall, Ames, IA 50011 USA
[4] NOAA, Fish Ecol Div, Northwest Fisheries Sci Ctr, Natl Marine Fisheries Serv, 2725 Montlake Blvd E, Seattle, WA 98112 USA
[5] Univ Alaska Fairbanks, Coll Fisheries & Ocean Sci, Kodiak Seafood & Marine Sci Ctr, 118 Trident Way, Kodiak, AK 99615 USA
来源
R JOURNAL | 2019年 / 11卷 / 02期
关键词
R PACKAGE; PANEL-DATA; EVENTS;
D O I
暂无
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
The bayesdfa package provides a flexible Bayesian modeling framework for applying dynamic factor analysis (DFA) to multivariate time-series data as a dimension reduction tool. The core estimation is done with the Stan probabilistic programming language. In addition to being one of the few Bayesian implementations of DFA, novel features of this model include (1) optionally modeling latent process deviations as drawn from a Student-t distribution to better model extremes, and (2) optionally including autoregressive and moving-average components in the latent trends. Besides estimation, we provide a series of plotting functions to visualize trends, loadings, and model predicted values. A secondary analysis for some applications is to identify regimes in latent trends. We provide a flexible Bayesian implementation of a Hidden Markov Model-also written with Stan - to characterize regime shifts in latent processes. We provide simulation testing and details on parameter sensitivities in supplementary information.
引用
收藏
页码:46 / 55
页数:10
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