The complete chloroplast genome sequence of Sorbus amabilis (Rosaceae)

被引:0
|
作者
Zhang, Xingwang [1 ,2 ]
Xie, Yanping [1 ]
Xiao, Shuping [3 ]
Wu, Xiaomin [1 ]
机构
[1] Huaibei Normal Univ, Sch Life Sci, 100 Dongshan Rd, Huaibei, Peoples R China
[2] Huaibei Normal Univ, Sch Informat, Huaibei, Peoples R China
[3] Forestry Bur Mingxi Cty, Sanming, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2020年 / 5卷 / 03期
关键词
Chloroplast genome; Sorbus amabilis; phylogenetic analysis;
D O I
10.1080/23802359.2020.1768951
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Sorbus amabilis Cheng ex Yu, a small excellent ornamental tree species, is only distributed in Eastern China. In this study, we assembled and annotated the complete chloroplast (cp) genome of the species using the next-generation sequencing for the first time. The cp genome was 160,006 bp in size, consisting of two copies of invert repeat (IR) regions of 26,405 bp, one large single-copy (LSC) region of 87,870bp, and one small single-copy (SSC) region of 19,326 bp. The overall GC content of the genome was 36.55%. The genome was predicted to contain 128 genes, including 88 protein-coding genes, 37 tRNA genes, and eight rRNA genes. Phylogenetic analysis of 25 chloroplast genomes in Rosaceae indicated that S. amabilis is most closely related to S. commixta. These findings may provide useful information to the phylogeny of the genus Sorbus.
引用
收藏
页码:2184 / 2185
页数:2
相关论文
共 50 条
  • [1] The complete chloroplast genome sequence of Rubus amabilis Focke
    Yang, Fang
    Zhang, ZongHao
    Tong, Li
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (02): : 1975 - 1976
  • [2] The complete chloroplast genome of Sorbus folgneri (CKSchneid.) Rehder (Rosaceae)
    Qiu, Jing
    Chen, Lin
    Yi, Xiangui
    Li, Mingzhi
    Chen, Xin
    Tang, Gengguo
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (01): : 728 - 729
  • [3] The complete chloroplast genome sequence of the Chinese endemic species Sorbus setschwanensis (Rosaceae) and its phylogenetic analysis
    Wang, Qin
    Niu, Zhengyang
    Li, Jiabao
    Zhu, Kailin
    Chen, Xin
    [J]. NORDIC JOURNAL OF BOTANY, 2020, 38 (02)
  • [4] The complete chloroplast genome sequence of Rosa pricei (Rosaceae)
    Chen, Mingrui
    Zhang, Cheng
    Gao, Xinfen
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (01): : 1918 - 1919
  • [5] The complete chloroplast genome sequence of Rubus eucalyptus (Rosaceae)
    Zhu, Qiang
    Tian, Ying
    Liang, Wenyu
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 2976 - 2977
  • [6] Complete Chloroplast Genome Sequence Of Prunus Davidiana (Rosaceae)
    Zhang, Xin
    Yan, Jie
    Ling, Qin
    Fan, Lu
    Zhang, Manrang
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2018, 3 (02): : 890 - 891
  • [7] The complete chloroplast genome sequence of Rosa laevigata (Rosaceae)
    Zhang, Cheng
    Xiong, Xianhua
    Gao, Xinfen
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 3556 - 3557
  • [8] The complete chloroplast genome sequence ofMalus toringo(Rosaceae)
    Li, Yanan
    Liu, Yanlei
    Xu, Chao
    Li, Fengyi
    Wang, Ling
    Zhou, Shiliang
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (03): : 2832 - 2833
  • [9] The complete chloroplast genome sequence of Rosa acicularis in Rosaceae
    Chen, Xun
    Liu, Yanlei
    Sun, Jiahui
    Wang, Ling
    Zhou, Shiliang
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (01): : 1743 - 1744
  • [10] The complete chloroplast genome sequence ofMalus toringoides(Rosaceae)
    Li, Yanan
    Liu, Yanlei
    Wu, Ping
    Zhou, Sheng
    Wang, Ling
    Zhou, Shiliang
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (03): : 2790 - 2792