Draft genome sequence of a clinical Acinetobacter haemolyticus isolate from South Africa

被引：0
|
作者：
Founou, Raspail Carrel [1 ,2 ]
Founou, Luria Leslie [1 ,3 ]
Allam, Mushal [4 ]
Ismail, Arshad [4 ]
Essack, Sabiha Yusuf [1 ]
机构：
[1] Univ KwaZulu Natal, Coll Hlth Sci, Antimicrobial Res Unit, Private Bag X54001, ZA-4000 Durban, South Africa
[2] Ctr Expertise & Biol Diagnost Cameroon CEDBCAM, Dept Clin Microbiol, Yaoundee, Cameroon
[3] Ctr Expertise & Biol Diagnost Cameroon CEDBCAM, Dept Food Safety & Environm Hlth, Yaounde, Cameroon
[4] Natl Inst Communicable Dis, Sequencing Core Facil, Johannesburg, South Africa
来源：
JOURNAL OF GLOBAL ANTIMICROBIAL RESISTANCE | 2020年 / 20卷
基金：
新加坡国家研究基金会; 英国医学研究理事会;
关键词：
Whole-genome sequencing; Antimicrobial resistance; Acinetobacter haemolyticus; Carriage; South Africa; ANTIMICROBIAL RESISTANCE;
D O I：
10.1016/j.jgar.2019.10.015
中图分类号：
R51 [传染病];
学科分类号：
100401 ;
摘要：
Objectives: Here we describe the draft genome sequence of a clinical Acinetobacter haemolyticus isolate (A109R1B4) from a rectal swab of a hospitalised patient in South Africa. Methods: Genomic DNA from the isolate was sequenced using an Illumina MiSeq platform. Generated reads were de novo assembled using Qiagen CLC Genomics Workbench. The assembled contigs were annotated and antimicrobial resistance genes and sequence type were identified. Results: The genome comprised 281 contigs with a total assembly length of 3 371 389 bp, a G + C content of 39.9% and an N50 value of 58 196 bp, and reference coverage was 93.08 while the coverage was 88.08. A total of 3387 genes, 3292 coding sequences (CDS), 3175 coding genes and 95 RNA genes were detected. The antimicrobial resistance genes blaOXA- 264 and aac(6')-Ig were detected. Conclusion: The genome sequence reported will serve as a reference point for molecular epidemiological studies of antibiotic-resistant A. haemolyticus in Africa. (C) 2019 International Society for Antimicrobial Chemotherapy. Published by Elsevier Ltd.
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页码：16 / 17
页数：2
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