Comparative structural and functional analysis of the olfactory receptor genes flanking the human and mouse β-globin gene clusters

被引:56
|
作者
Bulger, M
Bender, MA
van Doorninck, JH
Wertman, B
Farrell, CM
Felsenfeld, G
Groudine, M
Hardison, R
机构
[1] Fred Hutchinson Canc Res Ctr, Seattle, WA 98109 USA
[2] Univ Washington, Sch Med, Seattle, WA 98195 USA
[3] Columbia Univ Coll Phys & Surg, Howard Hughes Med Inst, New York, NY 10032 USA
[4] NIDDKD, NIH, Bethesda, MD 20892 USA
[5] Penn State Univ, Dept Biochem & Mol Biol, University Pk, PA 16802 USA
关键词
D O I
10.1073/pnas.97.26.14560
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
By sequencing regions flanking the beta -globin gene complex in mouse (Hbbc) and human (HBBC), we have shown that the beta -globin gene cluster is surrounded by a larger duster of olfactory receptor genes (ORGs). To facilitate sequence comparisons and to investigate the regulation of ORC expression, we have mapped 5' sequences of mRNA from olfactory epithelium encoding beta -globin-proximal ORGs. We have found that several of these genes contain multiple noncoding exons that can be alternatively spliced. Surprisingly, the only common motifs found in the promoters of these genes are a "TATA" box and a purine-rich motif. Sequence comparisons between human and mouse reveal that most of the conserved regions are confined to the coding regions and transcription units of the genes themselves, but a few blocks of conserved sequence also are found outside of ORG transcription units. The possible influence of beta -globin regulatory sequences on ORG expression in olfactory epithelium was tested in mice containing a deletion of the endogenous beta -globin locus control region, but no change in expression of the neighboring ORGs was detected. We evaluate the implications of these results for possible mechanisms of regulation of ORG transcription.
引用
收藏
页码:14560 / 14565
页数:6
相关论文
共 50 条
  • [1] Characterization of olfactory receptor genes flanking the mouse Beta globin locus.
    Wertman, B
    Bender, MA
    Bulger, M
    Groudine, M
    [J]. JOURNAL OF INVESTIGATIVE MEDICINE, 2000, 48 (01) : 15A - 15A
  • [2] Conservation of sequence and structure flanking the mouse and human β-globin loci:: The β-globin genes are embedded within an array of odorant receptor genes
    Bulger, M
    von Doorninck, JH
    Saitoh, N
    Telling, A
    Farrell, C
    Bender, MA
    Felsenfeld, G
    Axel, R
    Groudine, M
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (09) : 5129 - 5134
  • [3] Structure and expression of olfactory receptor genes surrounding the mouse beta-globin gene cluster.
    Hardison, R
    Bulger, M
    Wertman, B
    Bender, M
    Groudine, M
    [J]. BLOOD CELLS MOLECULES AND DISEASES, 2000, 26 (05) : 517 - 517
  • [4] Structural and functional characterizations of the 5′-flanking region of the mouse glucagon receptor gene:: Comparison with the rat gene
    Geiger, A
    Decaux, JF
    Burcelin, R
    Le Cam, A
    Salazar, G
    Charron, MJ
    Girard, J
    Kervran, A
    [J]. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2000, 272 (03) : 912 - 921
  • [5] Epigenetic analysis of the human α- and β-globin gene clusters
    Fathallah, Hassana
    Portnoy, Gregory
    Atweh, George F.
    [J]. BLOOD CELLS MOLECULES AND DISEASES, 2008, 40 (02) : 166 - 173
  • [6] Comparative evolutionary analysis of olfactory receptor gene clusters between humans and mice
    Niimura, Y
    Nei, M
    [J]. GENE, 2005, 346 : 13 - 21
  • [7] Conservation of sequence and structure flanking the mouse and human β-globin loci:: The β-globin genes are embedded within an array of odorant receptor genes (vol 96, pg 5129, 1999)
    Bulger, M
    von Doorninck, JH
    Saitoh, N
    Telling, A
    Farrell, C
    Bender, MA
    Felsenfeld, G
    Axel, R
    Groudine, M
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (14) : 8307 - 8307
  • [8] Location of mouse and human genes corresponding to conserved canine olfactory receptor gene subfamilies
    Ethan A. Carver
    Laurie Issel-Tarver
    Jasper Rine
    Anne S. Olsen
    Lisa Stubbs
    [J]. Mammalian Genome, 1998, 9 : 349 - 354
  • [9] Location of mouse and human genes corresponding to conserved canine olfactory receptor gene subfamilies
    Carver, EA
    Issel-Tarver, L
    Rine, J
    Olsen, AS
    Stubbs, L
    [J]. MAMMALIAN GENOME, 1998, 9 (05) : 349 - 354
  • [10] Comparative DNA sequence analysis of mouse and human protocadherin gene clusters
    Wu, Q
    Zhang, T
    Cheng, JF
    Kim, Y
    Grimwood, J
    Schmutz, J
    Dickson, M
    Noonan, JP
    Zhang, MQ
    Myers, RM
    Maniatis, T
    [J]. GENOME RESEARCH, 2001, 11 (03) : 389 - 404