Genome sequence of Kobresia littledalei, the first chromosome-level genome in the family Cyperaceae

被引:32
|
作者
Can, Muyou [1 ,2 ]
Wei, Wei [1 ,2 ]
Zi, Hailing [3 ]
Bai, Magaweng [1 ,2 ]
Liu, Yunfei [1 ,2 ]
Gao, Dan [3 ]
Tu, Dengqunpei [1 ,2 ]
Bao, Yuhong [1 ,2 ]
Wang, Li [1 ,2 ]
Chen, Shaofeng [1 ,2 ]
Zhao, Xing [3 ]
Qu, Guangpeng [1 ,2 ]
机构
[1] State Key Lab Hulless Barley & Yak Germplasm Reso, Lhasa 850000, Peoples R China
[2] Tibet Acad Agr & Anim Husb Sci, Inst Grassland Sci, Lhasa 850000, Peoples R China
[3] Novogene Bioinformat Inst, Beijing 100083, Peoples R China
关键词
PREDICTION; FINDER;
D O I
10.1038/s41597-020-0518-3
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Kobresiaplants are important forage resources in the Qinghai-Tibet Plateau and are essential in maintaining the ecological balance of grasslands. Therefore, it is beneficial to obtainKobresiagenome resources and study the adaptive characteristics ofKobresiaplants in the Qinghai-Tibetan Plateau. We assembled the genome ofKobresia littledaleiC. B. Clarke, which was about 373.85 Mb in size. 96.82% of the bases were attached to 29 pseudo-chromosomes, combining PacBio, Illumina and Hi-C sequencing data. Additional investigation of the annotation identified 23,136 protein-coding genes. 98.95% of these were functionally annotated. According to phylogenetic analysis, K. littledaleiin Cyperaceae separated from Poaceae about 97.6 million years ago after separating fromAnanas comosusin Bromeliaceae about 114.3mya. ForK. littledalei, we identified a high-quality genome at the chromosome level. This is the first time a reference genome has been established for a species of Cyperaceae. This genome will help additional studies focusing on the processes of plant adaptation to environments with high altitude and cold weather.
引用
收藏
页数:8
相关论文
共 50 条
  • [1] Genome sequence of Kobresia littledalei, the first chromosome-level genome in the family Cyperaceae
    Muyou Can
    Wei Wei
    Hailing Zi
    Magaweng Bai
    Yunfei Liu
    Dan Gao
    Dengqunpei Tu
    Yuhong Bao
    Li Wang
    Shaofeng Chen
    Xing Zhao
    Guangpeng Qu
    Scientific Data, 7
  • [2] Genome Sequence of Elaeagnus mollis, the First Chromosome-Level Genome of the Family Elaeagnaceae
    Ren, Baoqing
    Ru, Dafu
    Chen, Luqin
    Duan, Na
    Li, Yong
    Shi, Jianwei
    Cao, Jianting
    Liu, Bingbing
    GENOME BIOLOGY AND EVOLUTION, 2021, 13 (12):
  • [3] Chromosome-level genome assembly of Helwingia omeiensis: the first genome in the family Helwingiaceae
    Chen, Yanyu
    Feng, Landi
    Lin, Hao
    Liu, Jianquan
    Hu, Quanjun
    SCIENTIFIC DATA, 2024, 11 (01)
  • [4] Genome sequence of the agarwood tree Aquilaria sinensis (Lour.) Spreng: the first chromosome-level draft genome in the Thymelaeceae family
    Ding, Xupo
    Mei, Wenli
    Lin, Qiang
    Wang, Hao
    Wang, Jun
    Peng, Shiqing
    Li, Huiliang
    Zhu, Jiahong
    Li, Wei
    Wang, Pei
    Chen, Huiqin
    Dong, Wenhua
    Guo, Dong
    Cai, Caihong
    Huang, Shengzhuo
    Cui, Peng
    Dai, Haofu
    GIGASCIENCE, 2020, 9 (03):
  • [5] Genome sequence of the barred knifejaw Oplegnathus fasciatus (Temminck & Schlegel, 1844): the first chromosome-level draft genome in the family Oplegnathidae
    Xiao, Yongshuang
    Xiao, Zhizhong
    Ma, Daoyuan
    Liu, Jing
    Li, Jun
    GIGASCIENCE, 2019, 8 (03):
  • [6] Efficient and Highly Continuous Chromosome-Level Genome Assembly of the First Chameleon Genome
    Xie, Hongxin
    Chen, Zixuan
    Pang, Shuai
    Du, Weiguo
    GENOME BIOLOGY AND EVOLUTION, 2023, 15 (08):
  • [7] The chromosome-level genome of Cherax quadricarinatus
    Chen, Honglin
    Zhang, Rui
    Liu, Feng
    Shao, Changwei
    Liu, Fangfang
    Li, Weidong
    Ren, Jindong
    Niu, Baolong
    Liu, Haipeng
    Lou, Bao
    SCIENTIFIC DATA, 2023, 10 (01)
  • [8] The chromosome-level genome of Cherax quadricarinatus
    Honglin Chen
    Rui Zhang
    Feng Liu
    Changwei Shao
    Fangfang Liu
    Weidong Li
    Jindong Ren
    Baolong Niu
    Haipeng Liu
    Bao Lou
    Scientific Data, 10
  • [9] The chromosome-level genome sequence and karyotypic evolution of Megadenia pygmaea (Brassicaceae)
    Yang, Wenjie
    Zhang, Lei
    Mandakova, Terezie
    Huang, Li
    Li, Ting
    Jiang, Jiebei
    Yang, Yongzhi
    Lysak, Martin A.
    Liu, Jianquan
    Hu, Quanjun
    MOLECULAR ECOLOGY RESOURCES, 2021, 21 (03) : 871 - 879
  • [10] Chromosome-level genome reference and genome editing of the tea geometrid
    Pan, Yunjie
    Fang, Gangqi
    Wang, Zhibo
    Cao, Yanghui
    Liu, Yongjian
    Li, Guiyun
    Liu, Xiaojing
    Xiao, Qiang
    Zhan, Shuai
    MOLECULAR ECOLOGY RESOURCES, 2021, 21 (06) : 2034 - 2049