Synthesis, in silico study (DFT, ADMET) and crystal structure of novel sulfamoyloxy-oxazolidinones: Interaction with SARS-CoV-2

被引:5
|
作者
Bouzina, Abdeslem [1 ]
Berredjem, Malika [1 ]
Bouacida, Sofiane [2 ,3 ]
Bachari, Khaldoun [4 ]
Marminon, Christelle [5 ]
Le Borgne, Marc [5 ]
Bouaziz, Zouhair [6 ]
Bouone, Yousra Ouafa [1 ]
机构
[1] Badji Mokhtar Annaba Univ, Sci Fac, Synth Biomol & Mol Modelling Grp, Dept Chem,Lab Appl Organ Chem, Box 12, Annaba 23000, Algeria
[2] Univ Freres Mentouri, Unite Rech Chim Environm & Mol Struct, Constantine 25000, Algeria
[3] Univ Larbi Ben MHidi, Dept Sci Matiere, Oum El Bouaghi 04000, Algeria
[4] Ctr Rech Sci & Tech Anal Phys Chim CRAPC, BP384, Bou Ismail 42004, Tipasa Rp, Algeria
[5] Univ Claude Bernard Lyon 1, Univ Lyon, INSERM 1052,Small Mol Biol Targets Team, CNRS 5286,Ctr Leon Berard,Ctr Rech Cancerol Lyon, F-69373 Lyon, France
[6] Univ Lyon 1, Univ Lyon, SFR Sante Lyon Est CNRS UMS3453, INSERM US7,Fac Pharm ISPB,EA Bioact Mol & Med Che, F-69373 Lyon 8, France
关键词
Sulfamoyloxy-oxazolidinone; SARS-CoV-2; In silico study; Crystal structure; Molecular docking; DFT study; ANTIBACTERIAL ACTIVITY; EFFICIENT SYNTHESIS; DRUG DISCOVERY; SULFAMIDES; INHIBITORS; DOCKING; DESIGN; GLIDE; ACID;
D O I
10.1016/j.molstruc.2022.132579
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
A new series of sulfamoyloxyoxazolidinone (SOO) derivatives have been synthesized and characterized by single-crystal X-ray diffraction, NMR, IR, MS and EA. Chemical reactivity and geometrical characteristics of the target compounds were investigated using DFT method. The possible binding mode between SOO and Main protease (Mpro) of SARS-CoV-2 and their reactivity were studied using molecular docking simulation. Single crystal X-ray diffraction showed that SOO crystallizes in a monoclinic system with P 2 1 space group. The binding energy of the SARS-CoV-2/Mpro-SOO complex and the calculated inhibition constant using docking simulation showed that the active SOO molecule has the ability to inhibit SARS-CoV2. We studied the prediction of absorption, distribution, properties of metabolism, excretion and toxicity (ADMET) of the synthesized molecules. (C) 2022 Elsevier B.V. All rights reserved.
引用
收藏
页数:12
相关论文
共 50 条
  • [1] A convenient synthesis, in silico study and crystal structure of novel sulfamidophosphonates: Interaction with SARS-CoV-2
    Redjemia, Rayenne
    Berredjem, Malika
    Dekir, Ali
    Ibrahim-Ouali, Malika
    Aissaoui, Mohamed
    Bouacida, Sofiane
    Bouzina, Abdeslem
    Bahadi, Rania
    JOURNAL OF MOLECULAR STRUCTURE, 2023, 1275
  • [2] New bis hydrazone: Synthesis, X-ray crystal structure, DFT computations, conformational study and in silico study of the inhibition activity of SARS-CoV-2
    Tabbiche, Abdelkader
    Bouchama, Abdelaziz
    Chafai, Nadjib
    Zaidi, Farouk
    Chiter, Chaabane
    Yahiaoui, Messaoud
    Abiza, Abdellah
    JOURNAL OF MOLECULAR STRUCTURE, 2022, 1261
  • [3] Pyrazole, imidazole and triazole: In silico, docking and ADMET studies against SARS-CoV-2
    Mohamed M.
    Abrigach F.
    El Kadiri S.
    Omar Said Hassane S.
    Abdellattif M.H.
    Touzani R.
    Materials Today: Proceedings, 2023, 72 : 3686 - 3695
  • [4] The interaction of the bioflavonoids with five SARS-CoV-2 proteins targets: An in silico study
    Mishra, Ganesh Prasad
    Bhadane, Rajendra N.
    Panigrahi, Debadash
    Amawi, Haneen A.
    Asbhy, Charles R., Jr.
    Tiwari, Amit K.
    COMPUTERS IN BIOLOGY AND MEDICINE, 2021, 134
  • [5] One-pot synthesis, molecular docking, ADMET, and DFT studies of novel pyrazolines as promising SARS-CoV-2 main protease inhibitors
    Salih, Rezan Huseen Hama
    Hasan, Aso Hameed
    Hussein, Awaz Jamil
    Samad, Mohammed Kareem
    Shakya, Sonam
    Jamalis, Joazaizulfazli
    Hawaiz, Farouq Emam
    Pratama, Mohammad Rizki Fadhil
    RESEARCH ON CHEMICAL INTERMEDIATES, 2022, 48 (11) : 4729 - 4751
  • [6] One-pot synthesis, molecular docking, ADMET, and DFT studies of novel pyrazolines as promising SARS-CoV-2 main protease inhibitors
    Rezan Huseen Hama Salih
    Aso Hameed Hasan
    Awaz Jamil Hussein
    Mohammed Kareem Samad
    Sonam Shakya
    Joazaizulfazli Jamalis
    Farouq Emam Hawaiz
    Mohammad Rizki Fadhil Pratama
    Research on Chemical Intermediates, 2022, 48 : 4729 - 4751
  • [7] Copper(II) Chelates of Schiff Bases Enriched with Aliphatic Fragments: Synthesis, Crystal Structure, In Silico Studies of ADMET Properties and a Potency against a Series of SARS-CoV-2 Proteins
    Panova, Elizaveta V.
    Voronina, Julia K.
    Safin, Damir A.
    PHARMACEUTICALS, 2023, 16 (02)
  • [8] In Silico Characterization of Masitinib Interaction with SARS-CoV-2 Main Protease
    Martinez-Ortega, Ulises
    Figueroa-Figueroa, Diego, I
    Hernandez-Luis, Francisco
    Aguayo-Ortiz, Rodrigo
    CHEMMEDCHEM, 2021, 16 (15) : 2339 - 2344
  • [9] In silico analyses of betulin: DFT studies, corrosion inhibition properties, ADMET prediction, and molecular docking with a series of SARS-CoV-2 and monkeypox proteins
    Tatyana M. Burkhanova
    Alena I. Krysantieva
    Maria G. Babashkina
    Irina A. Konyaeva
    Lyudmila N. Monina
    Anastasiya N. Goncharenko
    Damir A. Safin
    Structural Chemistry, 2023, 34 : 1545 - 1556
  • [10] In silico analyses of betulin: DFT studies, corrosion inhibition properties, ADMET prediction, and molecular docking with a series of SARS-CoV-2 and monkeypox proteins
    Burkhanova, Tatyana M.
    Krysantieva, Alena, I
    Babashkina, Maria G.
    Konyaeva, Irina A.
    Monina, Lyudmila N.
    Goncharenko, Anastasiya N.
    Safin, Damir A.
    STRUCTURAL CHEMISTRY, 2023, 34 (04) : 1545 - 1556