Bispecific antibodies targeting distinct regions of the spike protein potently neutralize SARS-CoV-2 variants of concern

被引:69
|
作者
Cho, Hyeseon [1 ]
Gonzales-Wartz, Kristina Kay [2 ,13 ]
Huang, Deli [3 ]
Yuan, Meng [4 ]
Peterson, Mary [1 ]
Liang, Janie [5 ]
Beutler, Nathan [3 ]
Torres, Jonathan L. [4 ]
Cong, Yu [5 ]
Postnikova, Elena [5 ]
Bangaru, Sandhya [4 ]
Talana, Chloe Adrienna [6 ]
Shi, Wei [6 ]
Yang, Eun Sung [6 ]
Zhang, Yi [6 ]
Leung, Kwanyee [6 ]
Wang, Lingshu [6 ]
Peng, Linghang [3 ]
Skinner, Jeff [1 ]
Li, Shanping [1 ]
Wu, Nicholas C. [4 ,14 ,15 ]
Liu, Hejun [4 ]
Dacon, Cherrelle [2 ]
Moyer, Thomas [7 ]
Cohen, Melanie [7 ]
Zhao, Ming [8 ]
Lee, Frances Eun-Hyung [9 ]
Weinberg, Rona S. [10 ]
Douagi, Iyadh [7 ]
Gross, Robin [5 ]
Schmaljohn, Connie [5 ]
Pegu, Amarendra [6 ]
Mascola, John R. [6 ]
Holbrook, Michael [5 ]
Nemazee, David [3 ]
Rogers, Thomas F. [3 ,11 ]
Ward, Andrew B. [4 ]
Wilson, Ian A. [4 ,12 ]
Crompton, Peter D. [1 ]
Tan, Joshua [2 ]
机构
[1] NIAID, Malaria Infect Biol & Immun Sect, Lab Immunogenet, NIH, Rockville, MD 20852 USA
[2] NIAID, Antibody Biol Unit, Lab Immunogenet, NIH, Rockville, MD 20852 USA
[3] Scripps Res Inst, Dept Immunol & Microbiol, La Jolla, CA 92037 USA
[4] Scripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
[5] NIAID, Integrated Res Facil, Div Clin Res, NIH, Frederick, MD 21702 USA
[6] NIAID, Vaccine Res Ctr, NIH, Bethesda, MD 20892 USA
[7] NIAID, Flow Cytometry Sect, Res Technol Branch, NIH, Bethesda, MD 20892 USA
[8] NIAID, Prot Chem Sect, Res Technol Branch, NIH, Rockville, MD 20852 USA
[9] Emory Univ, Div Pulm Allergy Crit Care & Sleep Med, Atlanta, GA 30322 USA
[10] New York Blood Ctr, Lindsley F Kimball Res Inst, New York, NY 10065 USA
[11] Univ Calif San Diego, Dept Med, Div Infect Dis, La Jolla, CA 92037 USA
[12] Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USA
[13] Arizona State Univ, Ctr Personalized Diagnost, Biodesign Inst, Tempe, AZ 85287 USA
[14] Univ Illinois, Dept Biochem, Urbana, IL 61801 USA
[15] Univ Illinois, Carl R Woese Inst Genom Biol, Urbana, IL 61801 USA
基金
美国国家卫生研究院;
关键词
CENTER B-CELLS; EXPRESSION;
D O I
10.1126/scitranslmed.abj5413
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
The emergence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants of concern threatens the efficacy of existing vaccines and therapeutic antibodies and underscores the need for additional antibodybased tools that potently neutralize variants by targeting multiple sites of the spike protein. We isolated 216 monoclonal antibodies targeting SARS-CoV-2 from plasmablasts and memory B cells collected from patients with coronavirus disease 2019. The three most potent antibodies targeted distinct regions of the receptor binding domain (RBD), and all three neutralized the SARS-CoV-2 Alpha and Beta variants. The crystal structure of the most potent antibody, CV503, revealed that it binds to the ridge region of SARS-CoV-2 RBD, competes with the angiotensin-converting enzyme 2 receptor, and has limited contact with key variant residues K417, E484, and N501. We designed bispecific antibodies by combining nonoverlapping specificities and identified five bispecific antibodies that inhibit SARS-CoV-2 infection at concentrations of less than 1 ng/ml. Through a distinct mode of action, three bispecific antibodies cross-linked adjacent spike proteins using dual N-terminal domain-RBD specificities. One bispecific antibody was greater than 100-fold more potent than a cocktail of its parent monoclonals in vitro and prevented clinical disease in a hamster model at a dose of 2.5 mg/kg. Two bispecific antibodies in our panel comparably neutralized the Alpha, Beta, Gamma, and Delta variants and wild-type virus. Furthermore, a bispecific antibody that neutralized the Beta variant protected hamsters against SARS-CoV-2 expressing the E484K mutation. Thus, bispecific antibodies represent a promising next-generation countermeasure against SARS-CoV-2 variants of concern.
引用
收藏
页数:19
相关论文
共 50 条
  • [1] Monoclonal antibodies targeting two immunodominant epitopes on the Spike protein neutralize emerging SARS-CoV-2 variants of concern
    Kovacech, Branislav
    Fialova, Lubica
    Filipcik, Peter
    Skrabana, Rostislav
    Zilkova, Monika
    Paulenka-Ivanovova, Natalia
    Kovac, Andrej
    Palova, Denisa
    Rolkova, Gabriela Paulikova
    Tomkova, Katarina
    Csokova, Natalia Turic
    Markova, Karina
    Skrabanova, Michaela
    Sinska, Kristina
    Basheer, Neha
    Majerova, Petra
    Hanes, Jozef
    Parrak, Vojtech
    Prcina, Michal
    Cehlar, Ondrej
    Cente, Martin
    Piestansky, Juraj
    Fresser, Michal
    Novak, Michal
    Slavikova, Monika
    Borsova, Kristina
    Cabanova, Viktoria
    Brejova, Bronislava
    Vinar, Tomas
    Nosek, Jozef
    Klempa, Boris
    Eyer, Ludek
    Honig, Vaclav
    Palus, Martin
    Ruzek, Daniel
    Vyhlidalova, Tereza
    Strakova, Petra
    Mrazkova, Blanka
    Zudova, Dagmar
    Koubkova, Gizela
    Novosadova, Vendula
    Prochazka, Jan
    Sedlacek, Radislav
    Zilka, Norbert
    Kontsekova, Eva
    [J]. EBIOMEDICINE, 2022, 76
  • [2] Fluoxetine and Sertraline Potently Neutralize the Replication of Distinct SARS-CoV-2 Variants
    Thuemmler, Laura
    Beckmann, Nadine
    Sehl, Carolin
    Soddemann, Matthias
    Brass, Peer
    Bormann, Maren
    Brochhagen, Leonie
    Elsner, Carina
    Hoertel, Nicolas
    Cougoule, Celine
    Ciesek, Sandra
    Widera, Marek
    Dittmer, Ulf
    Lindemann, Monika
    Horn, Peter A.
    Witzke, Oliver
    Kadow, Stephanie
    Kamler, Markus
    Gulbins, Erich
    Becker, Katrin Anne
    Krawczyk, Adalbert
    [J]. VIRUSES-BASEL, 2024, 16 (04):
  • [3] Cross-Neutralization of Emerging SARS-CoV-2 Variants of Concern by Antibodies Targeting Distinct Epitopes on Spike
    Changrob, Siriruk
    Fu, Yanbin
    Guthmiller, Jenna J.
    Halfmann, Peter J.
    Li, Lei
    Stamper, Christopher T.
    Dugan, Haley L.
    Accola, Molly
    Rehrauer, William
    Zheng, Nai-Ying
    Huang, Min
    Wang, Jiaolong
    Erickson, Steven A.
    Utset, Henry A.
    Graves, Hortencia M.
    Amanat, Fatima
    Sather, D. Noah
    Krammer, Florian
    Kawaoka, Yoshihiro
    Wilson, Patrick C.
    [J]. MBIO, 2021, 12 (06):
  • [4] Human monoclonal antibodies to the spike subdomain 1 neutralize SARS-CoV-2 and its variants of concern
    Bianchini, F.
    Crivelli, V.
    Abernathy, M. E.
    Guerra, C.
    Palus, M.
    Marcotte, H.
    Piralla, A.
    Pedotti, M.
    De Gasparo, R.
    Simonelli, L.
    Matkovic, M.
    Toscano, C.
    Biggiogero, M.
    Calvaruso, V.
    Rincon, T. Cervantes
    Muri, J.
    Podesvova, L.
    Shanbhag, A.
    Celoria, A.
    Sgrignani, J.
    Stefanik, M.
    Honig, V.
    Pranclova, V.
    Michalcikova, T.
    Prochazka, J.
    Guerrini, G.
    Mehn, D.
    Ciabattini, A.
    Abolhassani, H.
    Jarrossay, D.
    Uguccioni, M.
    Medaglini, D.
    Pan-Hammarstrom, Q.
    Calzolai, L.
    Baldanti, F.
    Franzetti-Pellanda, A.
    Garzoni, C.
    Sedlacek, R.
    Ruzek, D.
    Varani, L.
    Cavalli, A.
    Barnes, C. O.
    Robbiani, D. F.
    [J]. SWISS MEDICAL WEEKLY, 2022, 152 : 10S - 10S
  • [5] Antibodies Targeting Two Epitopes in SARS-CoV-2 Neutralize Pseudoviruses with the Spike Proteins from Different Variants
    Yang, Chee-Hing
    Li, Hui-Chun
    Lee, Wen-Han
    Lo, Shih-Yen
    [J]. PATHOGENS, 2021, 10 (07):
  • [6] A Bispecific Antibody Targeting RBD and S2 Potently Neutralizes SARS-CoV-2 Omicron and Other Variants of Concern
    Yuan, Mengqi
    Chen, Xiangyu
    Zhu, Yanzhi
    Dong, Xiaoqing
    Liu, Yan
    Qian, Zhaohui
    Ye, Lilin
    Liu, Pinghuang
    [J]. JOURNAL OF VIROLOGY, 2022, 96 (16)
  • [7] Single-Domain Antibodies Efficiently Neutralize SARS-CoV-2 Variants of Concern
    Favorskaya, Irina A.
    Shcheblyakov, Dmitry V.
    Esmagambetov, Ilias B.
    Dolzhikova, Inna V.
    Alekseeva, Irina A.
    Korobkova, Anastasia I.
    Voronina, Daria V.
    Ryabova, Ekaterina I.
    Derkaev, Artem A.
    Kovyrshina, Anna V.
    Iliukhina, Anna A.
    Botikov, Andrey G.
    Voronina, Olga L.
    Egorova, Daria A.
    Zubkova, Olga V.
    Ryzhova, Natalia N.
    Aksenova, Ekaterina I.
    Kunda, Marina S.
    Logunov, Denis Y.
    Naroditsky, Boris S.
    Gintsburg, Alexandr L.
    [J]. FRONTIERS IN IMMUNOLOGY, 2022, 13
  • [8] Neutralizing antibodies targeting SARS-CoV-2 spike protein
    Shi Xiaojie
    Li Yu
    Yan Lei
    Yang Guang
    Qiang Min
    [J]. STEM CELL RESEARCH, 2021, 50
  • [9] Comprehensive engineering of a therapeutic neutralizing antibody targeting SARS-CoV-2 spike protein to neutralize escape variants
    Kuramochi, Taichi
    Gan, Siok Wan
    Ho, Adrian W. S.
    Wang, Bei
    Kageji, Nagisa
    Nambu, Takeru
    Iida, Sayaka
    Okuda-Miura, Momoko
    Chia, Wei Shan
    Yeo, Chiew Ying
    Chen, Dan
    Lee, Wen-Hsin
    Ngoh, Eve Zi Xian
    Salleh, Siti Nazihah Mohd
    Wang, Cheng-, I
    Igawa, Tomoyuki
    Shimada, Hideaki
    [J]. MABS, 2022, 14 (01)
  • [10] In-Silico Design of a Novel Tridecapeptide Targeting Spike Protein of SARS-CoV-2 Variants of Concern
    Sajjan Rajpoot
    Kundan Solanki
    Ashutosh Kumar
    Kam Y. J. Zhang
    Soni Savai Pullamsetti
    Rajkumar Savai
    Syed M. Faisal
    Qiuwei Pan
    Mirza S. Baig
    [J]. International Journal of Peptide Research and Therapeutics, 2022, 28